miRNA display CGI


Results 21 - 40 of 1123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21582 3' -66.6 NC_004812.1 + 20999 0.66 0.474922
Target:  5'- cCAGGUGCacgaagcgcgUGCgCCCCAC-CGGGCcguugaggccGCGCa -3'
miRNA:   3'- -GUCCGUG----------GCG-GGGGUGcGCCCG----------CGCG- -5'
21582 3' -66.6 NC_004812.1 + 99503 0.66 0.474922
Target:  5'- uGGGCGCCGUUCUUgaACG-GGGUccGCGCc -3'
miRNA:   3'- gUCCGUGGCGGGGG--UGCgCCCG--CGCG- -5'
21582 3' -66.6 NC_004812.1 + 2732 0.66 0.474922
Target:  5'- -cGGCGCgGCgCagguCGCGCGcGGCGgGCc -3'
miRNA:   3'- guCCGUGgCGgGg---GUGCGC-CCGCgCG- -5'
21582 3' -66.6 NC_004812.1 + 55518 0.66 0.474922
Target:  5'- gAGuGCcgcgugGCCGUgCgCCACGC-GGCGCGCc -3'
miRNA:   3'- gUC-CG------UGGCGgG-GGUGCGcCCGCGCG- -5'
21582 3' -66.6 NC_004812.1 + 99413 0.66 0.474922
Target:  5'- gCGGGCcggagacagACCGgaCCCCCG-GCGGGCuCGUu -3'
miRNA:   3'- -GUCCG---------UGGC--GGGGGUgCGCCCGcGCG- -5'
21582 3' -66.6 NC_004812.1 + 153339 0.66 0.474922
Target:  5'- cCGGGCGgCGUCUCCu--CGGGCG-GCg -3'
miRNA:   3'- -GUCCGUgGCGGGGGugcGCCCGCgCG- -5'
21582 3' -66.6 NC_004812.1 + 60526 0.66 0.474922
Target:  5'- -cGGC-UCGCCCUCGaggacCGUGuGCGCGCg -3'
miRNA:   3'- guCCGuGGCGGGGGU-----GCGCcCGCGCG- -5'
21582 3' -66.6 NC_004812.1 + 15292 0.66 0.474922
Target:  5'- -uGGUACaCGCgCCUCACGuCGGGgGgGUc -3'
miRNA:   3'- guCCGUG-GCG-GGGGUGC-GCCCgCgCG- -5'
21582 3' -66.6 NC_004812.1 + 123139 0.66 0.474922
Target:  5'- gAGGUcgGCCGUCCgC-CGCaGGGCGcCGUc -3'
miRNA:   3'- gUCCG--UGGCGGGgGuGCG-CCCGC-GCG- -5'
21582 3' -66.6 NC_004812.1 + 128240 0.66 0.474922
Target:  5'- -cGGCGCgGCgCagguCGCGCGcGGCGgGCc -3'
miRNA:   3'- guCCGUGgCGgGg---GUGCGC-CCGCgCG- -5'
21582 3' -66.6 NC_004812.1 + 64227 0.66 0.474922
Target:  5'- -cGGCACgCGCUUUCGauucggaGCGGGCG-GCg -3'
miRNA:   3'- guCCGUG-GCGGGGGUg------CGCCCGCgCG- -5'
21582 3' -66.6 NC_004812.1 + 12369 0.66 0.474922
Target:  5'- gGGGCG-CGCCCggCCGCGCggccgggaGGGCGaagaGCc -3'
miRNA:   3'- gUCCGUgGCGGG--GGUGCG--------CCCGCg---CG- -5'
21582 3' -66.6 NC_004812.1 + 147743 0.66 0.474922
Target:  5'- gCGGGguCCGCgggacgcggggCUCC-CGCGGGaCGCGg -3'
miRNA:   3'- -GUCCguGGCG-----------GGGGuGCGCCC-GCGCg -5'
21582 3' -66.6 NC_004812.1 + 80506 0.66 0.474922
Target:  5'- gAGGcCGCCGCCgcggaCCugGCGGagaaGCuCGCg -3'
miRNA:   3'- gUCC-GUGGCGGg----GGugCGCC----CGcGCG- -5'
21582 3' -66.6 NC_004812.1 + 135053 0.66 0.474047
Target:  5'- gGGGaGCUGCUCgUguacauggacgggGCGgGGGCGCGCu -3'
miRNA:   3'- gUCCgUGGCGGGgG-------------UGCgCCCGCGCG- -5'
21582 3' -66.6 NC_004812.1 + 31629 0.66 0.474047
Target:  5'- -cGGCGCgGUCgCCgGCGgGGGUgggggcgGCGCg -3'
miRNA:   3'- guCCGUGgCGG-GGgUGCgCCCG-------CGCG- -5'
21582 3' -66.6 NC_004812.1 + 728 0.66 0.474047
Target:  5'- -cGGCGCgGUCgCCgGCGgGGGUgggggcgGCGCg -3'
miRNA:   3'- guCCGUGgCGG-GGgUGCgCCCG-------CGCG- -5'
21582 3' -66.6 NC_004812.1 + 135858 0.66 0.473173
Target:  5'- gAGGUcaGCCGCCCCgaccacccacaggUgguacagacggggGCGgGGGCGCGg -3'
miRNA:   3'- gUCCG--UGGCGGGG-------------G-------------UGCgCCCGCGCg -5'
21582 3' -66.6 NC_004812.1 + 2922 0.66 0.472301
Target:  5'- gGGaGC-CCGCCCCguCcucggucacccucgGCGGGCGCa- -3'
miRNA:   3'- gUC-CGuGGCGGGGguG--------------CGCCCGCGcg -5'
21582 3' -66.6 NC_004812.1 + 83083 0.66 0.472301
Target:  5'- gCGGGC-CCGCCCCCG-GCcaccGGCcuccuguucggcacGCGCc -3'
miRNA:   3'- -GUCCGuGGCGGGGGUgCGc---CCG--------------CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.