miRNA display CGI


Results 41 - 60 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21582 5' -58.9 NC_004812.1 + 34982 0.67 0.649839
Target:  5'- gAGGCGCGCC-CCGUuguAGUagacCGCGUUg -3'
miRNA:   3'- -UUCGCGCGGaGGCGuu-UCA----GCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 1499 0.67 0.700833
Target:  5'- gGAGCGCcgGCCggcCCGCGccGcCGCGCg- -3'
miRNA:   3'- -UUCGCG--CGGa--GGCGUuuCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 141600 0.67 0.649839
Target:  5'- uGGGCGCcuGCCccgUCCGCAAccuGcCGCGCUg -3'
miRNA:   3'- -UUCGCG--CGG---AGGCGUUu--CaGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 59236 0.67 0.6601
Target:  5'- uGGCGUgguugGCCUCCGUGAGGcCGuCGCg- -3'
miRNA:   3'- uUCGCG-----CGGAGGCGUUUCaGC-GCGaa -5'
21582 5' -58.9 NC_004812.1 + 75272 0.67 0.6601
Target:  5'- cAGCGCGuCCUUgGCcucgcccAGGUCGCGCc- -3'
miRNA:   3'- uUCGCGC-GGAGgCGu------UUCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 96693 0.67 0.6601
Target:  5'- cGAGUGgGCCggcaucgCCGCGGGGUC-CGCg- -3'
miRNA:   3'- -UUCGCgCGGa------GGCGUUUCAGcGCGaa -5'
21582 5' -58.9 NC_004812.1 + 148964 0.67 0.6601
Target:  5'- aGAGCGgGUCgUCgGCGAGG-CGCGCg- -3'
miRNA:   3'- -UUCGCgCGG-AGgCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 60839 0.67 0.670339
Target:  5'- cGGGCGCGCU--CGCAGAGgCGCGUc- -3'
miRNA:   3'- -UUCGCGCGGagGCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 136504 0.67 0.670339
Target:  5'- -cGCGCGCCgCUGCGcgcGG-CGCGCUc -3'
miRNA:   3'- uuCGCGCGGaGGCGUu--UCaGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 96186 0.67 0.700833
Target:  5'- -cGCGCuCCgaacCCGCAAcguggacgcGGUCGCGCg- -3'
miRNA:   3'- uuCGCGcGGa---GGCGUU---------UCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 39497 0.67 0.700833
Target:  5'- uGGCGCGCCgcCCG-GAGGcCGCGCc- -3'
miRNA:   3'- uUCGCGCGGa-GGCgUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 109274 0.67 0.690714
Target:  5'- cGGgGCGCgaCCGCAGAGgccuaccugCGCGCc- -3'
miRNA:   3'- uUCgCGCGgaGGCGUUUCa--------GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 98359 0.67 0.700833
Target:  5'- -cGCGCGCC-CCau--GGUCGUGCUg -3'
miRNA:   3'- uuCGCGCGGaGGcguuUCAGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 31182 0.67 0.680547
Target:  5'- -cGCGCGCgCUCCGCcgccguccGGcCGCGCc- -3'
miRNA:   3'- uuCGCGCG-GAGGCGuu------UCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 62348 0.67 0.700833
Target:  5'- cGGCGCGCgC-CCGCGgcgcguGGGUCgGCGCg- -3'
miRNA:   3'- uUCGCGCG-GaGGCGU------UUCAG-CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 77015 0.67 0.690714
Target:  5'- -cGCGCGCCUCCuccaGCAuGGccucuauggCGCGCa- -3'
miRNA:   3'- uuCGCGCGGAGG----CGUuUCa--------GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 21158 0.67 0.680547
Target:  5'- cGGCGCGCagcUCGCGGAGgagGCGCUg -3'
miRNA:   3'- uUCGCGCGga-GGCGUUUCag-CGCGAa -5'
21582 5' -58.9 NC_004812.1 + 43695 0.67 0.690714
Target:  5'- -cGCGCuGCCUUCGCGgcGAGg-GCGCUc -3'
miRNA:   3'- uuCGCG-CGGAGGCGU--UUCagCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 121144 0.67 0.690714
Target:  5'- -cGCGCGCCgacgCCGCGgcGcugcaGCGCUg -3'
miRNA:   3'- uuCGCGCGGa---GGCGUuuCag---CGCGAa -5'
21582 5' -58.9 NC_004812.1 + 121641 0.67 0.696792
Target:  5'- gGGGCGCGCCUCCcGCugguggccaacGUCGagcaGCUg -3'
miRNA:   3'- -UUCGCGCGGAGG-CGuuu--------CAGCg---CGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.