miRNA display CGI


Results 101 - 120 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21582 5' -58.9 NC_004812.1 + 50198 0.68 0.588254
Target:  5'- cGAGCGCcgcgGCCccCCGCu--GUCGCGCg- -3'
miRNA:   3'- -UUCGCG----CGGa-GGCGuuuCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 89961 0.68 0.629281
Target:  5'- cGGCGCGCCUCC-CGA---CGCGCc- -3'
miRNA:   3'- uUCGCGCGGAGGcGUUucaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 443 0.68 0.629281
Target:  5'- -cGCGCGCCcgCCGCGAgcccgggccgccGG-CGCGCc- -3'
miRNA:   3'- uuCGCGCGGa-GGCGUU------------UCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 154866 0.68 0.619001
Target:  5'- gGGGCGCGggcUCgggCCGCGGAGgCGCGCg- -3'
miRNA:   3'- -UUCGCGC---GGa--GGCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 152681 0.68 0.619001
Target:  5'- -cGCGCGCCgugCCGCGc---CGCGCg- -3'
miRNA:   3'- uuCGCGCGGa--GGCGUuucaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 134835 0.68 0.619001
Target:  5'- uGGCGCGCC-CCGgGGGGUgGCGa-- -3'
miRNA:   3'- uUCGCGCGGaGGCgUUUCAgCGCgaa -5'
21582 5' -58.9 NC_004812.1 + 129107 0.68 0.608732
Target:  5'- cGGGCGCGCCg--GCGAGGagcucUUGCGCUUg -3'
miRNA:   3'- -UUCGCGCGGaggCGUUUC-----AGCGCGAA- -5'
21582 5' -58.9 NC_004812.1 + 147076 0.68 0.608732
Target:  5'- gAAGCgGgGCCUCCGCAGccgaaCGCGCg- -3'
miRNA:   3'- -UUCG-CgCGGAGGCGUUuca--GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 130420 0.68 0.589275
Target:  5'- -cGCGCGCCgccgcucgcugcggcCCGCGGAGgcgGCGCUg -3'
miRNA:   3'- uuCGCGCGGa--------------GGCGUUUCag-CGCGAa -5'
21582 5' -58.9 NC_004812.1 + 27172 0.68 0.608732
Target:  5'- -cGCGCGCCgugCCGCc--GcCGCGCg- -3'
miRNA:   3'- uuCGCGCGGa--GGCGuuuCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 134744 0.69 0.557793
Target:  5'- gAGGCGCGCCUggCCGCGGGGaacaaCGUGUg- -3'
miRNA:   3'- -UUCGCGCGGA--GGCGUUUCa----GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 11494 0.69 0.578059
Target:  5'- -cGCuCGCCUCCGacgcGUCGCGCa- -3'
miRNA:   3'- uuCGcGCGGAGGCguuuCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 135449 0.69 0.557793
Target:  5'- cAGCGCcuCCUCCGCGAGcugCGCGCc- -3'
miRNA:   3'- uUCGCGc-GGAGGCGUUUca-GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 7455 0.69 0.567903
Target:  5'- -cGCcccuCGCCUCCGCGGGGacCGCGCg- -3'
miRNA:   3'- uuCGc---GCGGAGGCGUUUCa-GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 65095 0.69 0.526807
Target:  5'- -cGCGCGCC-CCGCGGAGgaguggcUgGCGCg- -3'
miRNA:   3'- uuCGCGCGGaGGCGUUUC-------AgCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 26971 0.69 0.537734
Target:  5'- aGGGgGCGCC-CCGCGAAcucggCGCGCUc -3'
miRNA:   3'- -UUCgCGCGGaGGCGUUUca---GCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 112912 0.69 0.537734
Target:  5'- gGAGCGC-CCUcgCCGCGAAGgcaGCGCg- -3'
miRNA:   3'- -UUCGCGcGGA--GGCGUUUCag-CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 132963 0.69 0.567903
Target:  5'- -cGCcccuCGCCUCCGCGGGGacCGCGCg- -3'
miRNA:   3'- uuCGc---GCGGAGGCGUUUCa-GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 108577 0.69 0.567903
Target:  5'- -cGCGCGCC-CCGCucGGgcaGCGCg- -3'
miRNA:   3'- uuCGCGCGGaGGCGuuUCag-CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 102832 0.69 0.557793
Target:  5'- cGGCGCGCCUCCaCGccGgcgaCGCGCa- -3'
miRNA:   3'- uUCGCGCGGAGGcGUuuCa---GCGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.