miRNA display CGI


Results 121 - 140 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21582 5' -58.9 NC_004812.1 + 135449 0.69 0.557793
Target:  5'- cAGCGCcuCCUCCGCGAGcugCGCGCc- -3'
miRNA:   3'- uUCGCGc-GGAGGCGUUUca-GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 134744 0.69 0.557793
Target:  5'- gAGGCGCGCCUggCCGCGGGGaacaaCGUGUg- -3'
miRNA:   3'- -UUCGCGCGGA--GGCGUUUCa----GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 43870 0.69 0.557793
Target:  5'- cGGCgGCGCCgCCGCGcGGuUCGCGCc- -3'
miRNA:   3'- uUCG-CGCGGaGGCGUuUC-AGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 132963 0.69 0.567903
Target:  5'- -cGCcccuCGCCUCCGCGGGGacCGCGCg- -3'
miRNA:   3'- uuCGc---GCGGAGGCGUUUCa-GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 20010 0.69 0.567903
Target:  5'- cGGCGcCGUCUCCGCGcgcGUCGCGg-- -3'
miRNA:   3'- uUCGC-GCGGAGGCGUuu-CAGCGCgaa -5'
21582 5' -58.9 NC_004812.1 + 72508 0.69 0.556785
Target:  5'- gGGGCGCGCCgCCGCcGGGGUCcgggccgGCGCc- -3'
miRNA:   3'- -UUCGCGCGGaGGCG-UUUCAG-------CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 96763 0.69 0.547734
Target:  5'- cGGCGCGCCgUCGCGAGGagGCGg-- -3'
miRNA:   3'- uUCGCGCGGaGGCGUUUCagCGCgaa -5'
21582 5' -58.9 NC_004812.1 + 15450 0.69 0.547734
Target:  5'- -cGCGCGCCUUCGaCucGG-CGCGCa- -3'
miRNA:   3'- uuCGCGCGGAGGC-GuuUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 76137 0.69 0.547734
Target:  5'- cGGCGCGCCgCCGCGucGcCGCGa-- -3'
miRNA:   3'- uUCGCGCGGaGGCGUuuCaGCGCgaa -5'
21582 5' -58.9 NC_004812.1 + 108577 0.69 0.567903
Target:  5'- -cGCGCGCC-CCGCucGGgcaGCGCg- -3'
miRNA:   3'- uuCGCGCGGaGGCGuuUCag-CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 65095 0.69 0.526807
Target:  5'- -cGCGCGCC-CCGCGGAGgaguggcUgGCGCg- -3'
miRNA:   3'- uuCGCGCGGaGGCGUUUC-------AgCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 112563 0.69 0.537734
Target:  5'- gGGGCGCGCCgUCCGaCGcgcAGGUgaCGCGCg- -3'
miRNA:   3'- -UUCGCGCGG-AGGC-GU---UUCA--GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 152229 0.7 0.479249
Target:  5'- cGGGCGaCGCCUCgGCcAGGgCGCGCg- -3'
miRNA:   3'- -UUCGC-GCGGAGgCGuUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 12108 0.7 0.521868
Target:  5'- -cGCGCGCCUCgCGCAGgaccagcgucccguuGGUcacguuccCGCGCUg -3'
miRNA:   3'- uuCGCGCGGAG-GCGUU---------------UCA--------GCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 126662 0.7 0.51793
Target:  5'- -cGCGCGCC-CCGuCGAcgccGUCGUGCUg -3'
miRNA:   3'- uuCGCGCGGaGGC-GUUu---CAGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 25863 0.7 0.498422
Target:  5'- cGGCGCGCCccgacggCCGCGAGGcCGaCGCc- -3'
miRNA:   3'- uUCGCGCGGa------GGCGUUUCaGC-GCGaa -5'
21582 5' -58.9 NC_004812.1 + 83285 0.7 0.508136
Target:  5'- cGAGCGCGgCgcuggCCGCGcuguGGUCGUGCa- -3'
miRNA:   3'- -UUCGCGCgGa----GGCGUu---UCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 148012 0.7 0.508136
Target:  5'- gAGGCGCgGCCUCCGgGcGG-CGCGCc- -3'
miRNA:   3'- -UUCGCG-CGGAGGCgUuUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 20104 0.7 0.479249
Target:  5'- gGAGCGCGCCgCgCGCAgcGgCGCGCg- -3'
miRNA:   3'- -UUCGCGCGGaG-GCGUuuCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 1017 0.7 0.504241
Target:  5'- gGGGcCGCGCCcCCGCGAGGgcccggccgcccgCGCGCg- -3'
miRNA:   3'- -UUC-GCGCGGaGGCGUUUCa------------GCGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.