miRNA display CGI


Results 101 - 120 of 186 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21582 5' -58.9 NC_004812.1 + 73055 0.68 0.619001
Target:  5'- gGGGCGCacgGCCUCC-CGGAGacCGCGCUc -3'
miRNA:   3'- -UUCGCG---CGGAGGcGUUUCa-GCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 59488 0.68 0.619001
Target:  5'- gAGGCGCGCCgCCGCGgcGgCGCGg-- -3'
miRNA:   3'- -UUCGCGCGGaGGCGUuuCaGCGCgaa -5'
21582 5' -58.9 NC_004812.1 + 29358 0.68 0.619001
Target:  5'- gGGGCGCGggcUCgggCCGCGGAGgCGCGCg- -3'
miRNA:   3'- -UUCGCGC---GGa--GGCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 100337 0.68 0.639563
Target:  5'- cGAGCGgGCCgCCGCGGGcGagGCGCa- -3'
miRNA:   3'- -UUCGCgCGGaGGCGUUU-CagCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 3599 0.68 0.608732
Target:  5'- cGGGCGCGCCg--GCGAGGagcucUUGCGCUUg -3'
miRNA:   3'- -UUCGCGCGGaggCGUUUC-----AGCGCGAA- -5'
21582 5' -58.9 NC_004812.1 + 27172 0.68 0.608732
Target:  5'- -cGCGCGCCgugCCGCc--GcCGCGCg- -3'
miRNA:   3'- uuCGCGCGGa--GGCGuuuCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 87019 0.68 0.59848
Target:  5'- -cGCGgGCCaCCGCc--GUCGCGCUc -3'
miRNA:   3'- uuCGCgCGGaGGCGuuuCAGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 7869 0.67 0.690714
Target:  5'- uAGCgGCGCC-CCGCGc-GUCGCGUc- -3'
miRNA:   3'- uUCG-CGCGGaGGCGUuuCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 21158 0.67 0.680547
Target:  5'- cGGCGCGCagcUCGCGGAGgagGCGCUg -3'
miRNA:   3'- uUCGCGCGga-GGCGUUUCag-CGCGAa -5'
21582 5' -58.9 NC_004812.1 + 281 0.67 0.680547
Target:  5'- -cGCGCGCgCUCCGCcgccguccGGcCGCGCc- -3'
miRNA:   3'- uuCGCGCG-GAGGCGuu------UCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 6360 0.67 0.680547
Target:  5'- cAGGCGCGCCgcCCGCcAGGgacgCGgGCa- -3'
miRNA:   3'- -UUCGCGCGGa-GGCGuUUCa---GCgCGaa -5'
21582 5' -58.9 NC_004812.1 + 141600 0.67 0.649839
Target:  5'- uGGGCGCcuGCCccgUCCGCAAccuGcCGCGCUg -3'
miRNA:   3'- -UUCGCG--CGG---AGGCGUUu--CaGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 34982 0.67 0.649839
Target:  5'- gAGGCGCGCC-CCGUuguAGUagacCGCGUUg -3'
miRNA:   3'- -UUCGCGCGGaGGCGuu-UCA----GCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 59236 0.67 0.6601
Target:  5'- uGGCGUgguugGCCUCCGUGAGGcCGuCGCg- -3'
miRNA:   3'- uUCGCG-----CGGAGGCGUUUCaGC-GCGaa -5'
21582 5' -58.9 NC_004812.1 + 75272 0.67 0.6601
Target:  5'- cAGCGCGuCCUUgGCcucgcccAGGUCGCGCc- -3'
miRNA:   3'- uUCGCGC-GGAGgCGu------UUCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 96693 0.67 0.6601
Target:  5'- cGAGUGgGCCggcaucgCCGCGGGGUC-CGCg- -3'
miRNA:   3'- -UUCGCgCGGa------GGCGUUUCAGcGCGaa -5'
21582 5' -58.9 NC_004812.1 + 31182 0.67 0.680547
Target:  5'- uGGGCGgucCGUCgUCCGCAGGGUCGUcccGCUg -3'
miRNA:   3'- -UUCGC---GCGG-AGGCGUUUCAGCG---CGAa -5'
21582 5' -58.9 NC_004812.1 + 148964 0.67 0.6601
Target:  5'- aGAGCGgGUCgUCgGCGAGG-CGCGCg- -3'
miRNA:   3'- -UUCGCgCGG-AGgCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 136504 0.67 0.670339
Target:  5'- -cGCGCGCCgCUGCGcgcGG-CGCGCUc -3'
miRNA:   3'- uuCGCGCGGaGGCGUu--UCaGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 60839 0.67 0.670339
Target:  5'- cGGGCGCGCU--CGCAGAGgCGCGUc- -3'
miRNA:   3'- -UUCGCGCGGagGCGUUUCaGCGCGaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.