miRNA display CGI


Results 41 - 60 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21582 5' -58.9 NC_004812.1 + 80919 0.7 0.498422
Target:  5'- --cUGC-CCUCCGCGGAGUCGgGCg- -3'
miRNA:   3'- uucGCGcGGAGGCGUUUCAGCgCGaa -5'
21582 5' -58.9 NC_004812.1 + 103713 0.7 0.498422
Target:  5'- cGGCGCGCCgggaGCGAGGgaaacggCGCGCUc -3'
miRNA:   3'- uUCGCGCGGagg-CGUUUCa------GCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 151371 0.7 0.498422
Target:  5'- cGGCGCGCCccgacggCCGCGAGGcCGaCGCc- -3'
miRNA:   3'- uUCGCGCGGa------GGCGUUUCaGC-GCGaa -5'
21582 5' -58.9 NC_004812.1 + 126526 0.7 0.504241
Target:  5'- gGGGcCGCGCCcCCGCGAGGgcccggccgcccgCGCGCg- -3'
miRNA:   3'- -UUC-GCGCGGaGGCGUUUCa------------GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 1017 0.7 0.504241
Target:  5'- gGGGcCGCGCCcCCGCGAGGgcccggccgcccgCGCGCg- -3'
miRNA:   3'- -UUC-GCGCGGaGGCGUUUCa------------GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 83285 0.7 0.508136
Target:  5'- cGAGCGCGgCgcuggCCGCGcuguGGUCGUGCa- -3'
miRNA:   3'- -UUCGCGCgGa----GGCGUu---UCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 148012 0.7 0.508136
Target:  5'- gAGGCGCgGCCUCCGgGcGG-CGCGCc- -3'
miRNA:   3'- -UUCGCG-CGGAGGCgUuUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 79357 0.7 0.508136
Target:  5'- cAGCgGCGCCcCCGCGAGGgcaGCGCc- -3'
miRNA:   3'- uUCG-CGCGGaGGCGUUUCag-CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 117111 0.7 0.508136
Target:  5'- gAGGCGCgGCCUCCGgGcGG-CGCGCc- -3'
miRNA:   3'- -UUCGCG-CGGAGGCgUuUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 68193 0.7 0.508136
Target:  5'- gGGGCGCGCCggaCGCccGGcCGCGCg- -3'
miRNA:   3'- -UUCGCGCGGag-GCGuuUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 126662 0.7 0.51793
Target:  5'- -cGCGCGCC-CCGuCGAcgccGUCGUGCUg -3'
miRNA:   3'- uuCGCGCGGaGGC-GUUu---CAGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 20299 0.7 0.51793
Target:  5'- cGGCGCGCCggCGCAgcG-CGCGCg- -3'
miRNA:   3'- uUCGCGCGGagGCGUuuCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 67387 0.7 0.51793
Target:  5'- -cGCGgGCCUCCGCc--GcCGCGCg- -3'
miRNA:   3'- uuCGCgCGGAGGCGuuuCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 12108 0.7 0.521868
Target:  5'- -cGCGCGCCUCgCGCAGgaccagcgucccguuGGUcacguuccCGCGCUg -3'
miRNA:   3'- uuCGCGCGGAG-GCGUU---------------UCA--------GCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 65095 0.69 0.526807
Target:  5'- -cGCGCGCC-CCGCGGAGgaguggcUgGCGCg- -3'
miRNA:   3'- uuCGCGCGGaGGCGUUUC-------AgCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 26971 0.69 0.537734
Target:  5'- aGGGgGCGCC-CCGCGAAcucggCGCGCUc -3'
miRNA:   3'- -UUCgCGCGGaGGCGUUUca---GCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 144254 0.69 0.537734
Target:  5'- cGGGCGCGCCccCCGCcAAGGUgGUGUg- -3'
miRNA:   3'- -UUCGCGCGGa-GGCG-UUUCAgCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 112912 0.69 0.537734
Target:  5'- gGAGCGC-CCUcgCCGCGAAGgcaGCGCg- -3'
miRNA:   3'- -UUCGCGcGGA--GGCGUUUCag-CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 112563 0.69 0.537734
Target:  5'- gGGGCGCGCCgUCCGaCGcgcAGGUgaCGCGCg- -3'
miRNA:   3'- -UUCGCGCGG-AGGC-GU---UUCA--GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 28917 0.69 0.541727
Target:  5'- uGGCGCGCCUCCgguucGCGGAaugccgcccggggacGUCGUGCc- -3'
miRNA:   3'- uUCGCGCGGAGG-----CGUUU---------------CAGCGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.