Results 61 - 80 of 186 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21582 | 5' | -58.9 | NC_004812.1 | + | 96763 | 0.69 | 0.547734 |
Target: 5'- cGGCGCGCCgUCGCGAGGagGCGg-- -3' miRNA: 3'- uUCGCGCGGaGGCGUUUCagCGCgaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 34786 | 0.69 | 0.547734 |
Target: 5'- -uGCGcCGCCUcCCGC---GUCGCGCUc -3' miRNA: 3'- uuCGC-GCGGA-GGCGuuuCAGCGCGAa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 76137 | 0.69 | 0.547734 |
Target: 5'- cGGCGCGCCgCCGCGucGcCGCGa-- -3' miRNA: 3'- uUCGCGCGGaGGCGUuuCaGCGCgaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 15450 | 0.69 | 0.547734 |
Target: 5'- -cGCGCGCCUUCGaCucGG-CGCGCa- -3' miRNA: 3'- uuCGCGCGGAGGC-GuuUCaGCGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 72508 | 0.69 | 0.556785 |
Target: 5'- gGGGCGCGCCgCCGCcGGGGUCcgggccgGCGCc- -3' miRNA: 3'- -UUCGCGCGGaGGCG-UUUCAG-------CGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 134744 | 0.69 | 0.557793 |
Target: 5'- gAGGCGCGCCUggCCGCGGGGaacaaCGUGUg- -3' miRNA: 3'- -UUCGCGCGGA--GGCGUUUCa----GCGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 135449 | 0.69 | 0.557793 |
Target: 5'- cAGCGCcuCCUCCGCGAGcugCGCGCc- -3' miRNA: 3'- uUCGCGc-GGAGGCGUUUca-GCGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 43870 | 0.69 | 0.557793 |
Target: 5'- cGGCgGCGCCgCCGCGcGGuUCGCGCc- -3' miRNA: 3'- uUCG-CGCGGaGGCGUuUC-AGCGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 102832 | 0.69 | 0.557793 |
Target: 5'- cGGCGCGCCUCCaCGccGgcgaCGCGCa- -3' miRNA: 3'- uUCGCGCGGAGGcGUuuCa---GCGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 20010 | 0.69 | 0.567903 |
Target: 5'- cGGCGcCGUCUCCGCGcgcGUCGCGg-- -3' miRNA: 3'- uUCGC-GCGGAGGCGUuu-CAGCGCgaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 132963 | 0.69 | 0.567903 |
Target: 5'- -cGCcccuCGCCUCCGCGGGGacCGCGCg- -3' miRNA: 3'- uuCGc---GCGGAGGCGUUUCa-GCGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 108577 | 0.69 | 0.567903 |
Target: 5'- -cGCGCGCC-CCGCucGGgcaGCGCg- -3' miRNA: 3'- uuCGCGCGGaGGCGuuUCag-CGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 71474 | 0.69 | 0.567903 |
Target: 5'- cAGGCGCGCCcCCGCccg--CGCGCc- -3' miRNA: 3'- -UUCGCGCGGaGGCGuuucaGCGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 7455 | 0.69 | 0.567903 |
Target: 5'- -cGCcccuCGCCUCCGCGGGGacCGCGCg- -3' miRNA: 3'- uuCGc---GCGGAGGCGUUUCa-GCGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 63008 | 0.69 | 0.578059 |
Target: 5'- gAAGCGCggGCCgCCGCGuccgcGAGcgCGCGCUUg -3' miRNA: 3'- -UUCGCG--CGGaGGCGU-----UUCa-GCGCGAA- -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 11494 | 0.69 | 0.578059 |
Target: 5'- -cGCuCGCCUCCGacgcGUCGCGCa- -3' miRNA: 3'- uuCGcGCGGAGGCguuuCAGCGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 50198 | 0.68 | 0.588254 |
Target: 5'- cGAGCGCcgcgGCCccCCGCu--GUCGCGCg- -3' miRNA: 3'- -UUCGCG----CGGa-GGCGuuuCAGCGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 130761 | 0.68 | 0.588254 |
Target: 5'- gGGGCGCGCCgagucggccgCCGCGGcccCGCGCUc -3' miRNA: 3'- -UUCGCGCGGa---------GGCGUUucaGCGCGAa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 5253 | 0.68 | 0.588254 |
Target: 5'- gGGGCGCGCCgagucggccgCCGCGGcccCGCGCUc -3' miRNA: 3'- -UUCGCGCGGa---------GGCGUUucaGCGCGAa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 61220 | 0.68 | 0.588254 |
Target: 5'- -cGCGgGCUUCCG---GGUCGCGCg- -3' miRNA: 3'- uuCGCgCGGAGGCguuUCAGCGCGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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