miRNA display CGI


Results 81 - 100 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21582 5' -58.9 NC_004812.1 + 5253 0.68 0.588254
Target:  5'- gGGGCGCGCCgagucggccgCCGCGGcccCGCGCUc -3'
miRNA:   3'- -UUCGCGCGGa---------GGCGUUucaGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 4912 0.68 0.589275
Target:  5'- -cGCGCGCCgccgcucgcugcggcCCGCGGAGgcgGCGCUg -3'
miRNA:   3'- uuCGCGCGGa--------------GGCGUUUCag-CGCGAa -5'
21582 5' -58.9 NC_004812.1 + 130420 0.68 0.589275
Target:  5'- -cGCGCGCCgccgcucgcugcggcCCGCGGAGgcgGCGCUg -3'
miRNA:   3'- uuCGCGCGGa--------------GGCGUUUCag-CGCGAa -5'
21582 5' -58.9 NC_004812.1 + 93695 0.68 0.592341
Target:  5'- aGGGCGCGCCcguUCCGCGcgugcacgcgguaguAGGgcaCGCGCg- -3'
miRNA:   3'- -UUCGCGCGG---AGGCGU---------------UUCa--GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 2451 0.68 0.59848
Target:  5'- cGAGUGCGCCUcgCCGCGgcggAAGUCcgggGCGCc- -3'
miRNA:   3'- -UUCGCGCGGA--GGCGU----UUCAG----CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 87019 0.68 0.59848
Target:  5'- -cGCGgGCCaCCGCc--GUCGCGCUc -3'
miRNA:   3'- uuCGCgCGGaGGCGuuuCAGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 127959 0.68 0.59848
Target:  5'- cGAGUGCGCCUcgCCGCGgcggAAGUCcgggGCGCc- -3'
miRNA:   3'- -UUCGCGCGGA--GGCGU----UUCAG----CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 147076 0.68 0.608732
Target:  5'- gAAGCgGgGCCUCCGCAGccgaaCGCGCg- -3'
miRNA:   3'- -UUCG-CgCGGAGGCGUUuca--GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 3599 0.68 0.608732
Target:  5'- cGGGCGCGCCg--GCGAGGagcucUUGCGCUUg -3'
miRNA:   3'- -UUCGCGCGGaggCGUUUC-----AGCGCGAA- -5'
21582 5' -58.9 NC_004812.1 + 27172 0.68 0.608732
Target:  5'- -cGCGCGCCgugCCGCc--GcCGCGCg- -3'
miRNA:   3'- uuCGCGCGGa--GGCGuuuCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 129107 0.68 0.608732
Target:  5'- cGGGCGCGCCg--GCGAGGagcucUUGCGCUUg -3'
miRNA:   3'- -UUCGCGCGGaggCGUUUC-----AGCGCGAA- -5'
21582 5' -58.9 NC_004812.1 + 152681 0.68 0.619001
Target:  5'- -cGCGCGCCgugCCGCGc---CGCGCg- -3'
miRNA:   3'- uuCGCGCGGa--GGCGUuucaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 29358 0.68 0.619001
Target:  5'- gGGGCGCGggcUCgggCCGCGGAGgCGCGCg- -3'
miRNA:   3'- -UUCGCGC---GGa--GGCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 73055 0.68 0.619001
Target:  5'- gGGGCGCacgGCCUCC-CGGAGacCGCGCUc -3'
miRNA:   3'- -UUCGCG---CGGAGGcGUUUCa-GCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 79045 0.68 0.619001
Target:  5'- -cGUG-GCCUCCGCGccGGUCGUGCc- -3'
miRNA:   3'- uuCGCgCGGAGGCGUu-UCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 59488 0.68 0.619001
Target:  5'- gAGGCGCGCCgCCGCGgcGgCGCGg-- -3'
miRNA:   3'- -UUCGCGCGGaGGCGUuuCaGCGCgaa -5'
21582 5' -58.9 NC_004812.1 + 134835 0.68 0.619001
Target:  5'- uGGCGCGCC-CCGgGGGGUgGCGa-- -3'
miRNA:   3'- uUCGCGCGGaGGCgUUUCAgCGCgaa -5'
21582 5' -58.9 NC_004812.1 + 95411 0.68 0.619001
Target:  5'- -cGCGCGCC-CgGCGAGuGaCGCGCUg -3'
miRNA:   3'- uuCGCGCGGaGgCGUUU-CaGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 154866 0.68 0.619001
Target:  5'- gGGGCGCGggcUCgggCCGCGGAGgCGCGCg- -3'
miRNA:   3'- -UUCGCGC---GGa--GGCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 443 0.68 0.629281
Target:  5'- -cGCGCGCCcgCCGCGAgcccgggccgccGG-CGCGCc- -3'
miRNA:   3'- uuCGCGCGGa-GGCGUU------------UCaGCGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.