miRNA display CGI


Results 41 - 60 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21582 5' -58.9 NC_004812.1 + 28429 0.67 0.704864
Target:  5'- cAGGUGCGUCUCCGCcAGGcgccgacgcagcgcCGCGCg- -3'
miRNA:   3'- -UUCGCGCGGAGGCGuUUCa-------------GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 90310 0.67 0.704864
Target:  5'- uGGGCGcCGCCagCCGCGAGGcgcucauccucgccuUCGUGCa- -3'
miRNA:   3'- -UUCGC-GCGGa-GGCGUUUC---------------AGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 1499 0.67 0.700833
Target:  5'- gGAGCGCcgGCCggcCCGCGccGcCGCGCg- -3'
miRNA:   3'- -UUCGCG--CGGa--GGCGUuuCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 127007 0.67 0.700833
Target:  5'- gGAGCGCcgGCCggcCCGCGccGcCGCGCg- -3'
miRNA:   3'- -UUCGCG--CGGa--GGCGUuuCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 8596 0.67 0.700833
Target:  5'- uGGCGCGCCgcCCG-GAGGcCGCGCc- -3'
miRNA:   3'- uUCGCGCGGa-GGCgUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 140959 0.67 0.700833
Target:  5'- cGGGCGUGCU--CGCGGAG-CGCGCg- -3'
miRNA:   3'- -UUCGCGCGGagGCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 96186 0.67 0.700833
Target:  5'- -cGCGCuCCgaacCCGCAAcguggacgcGGUCGCGCg- -3'
miRNA:   3'- uuCGCGcGGa---GGCGUU---------UCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 39497 0.67 0.700833
Target:  5'- uGGCGCGCCgcCCG-GAGGcCGCGCc- -3'
miRNA:   3'- uUCGCGCGGa-GGCgUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 98359 0.67 0.700833
Target:  5'- -cGCGCGCC-CCau--GGUCGUGCUg -3'
miRNA:   3'- uuCGCGCGGaGGcguuUCAGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 62348 0.67 0.700833
Target:  5'- cGGCGCGCgC-CCGCGgcgcguGGGUCgGCGCg- -3'
miRNA:   3'- uUCGCGCG-GaGGCGU------UUCAG-CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 121641 0.67 0.696792
Target:  5'- gGGGCGCGCCUCCcGCugguggccaacGUCGagcaGCUg -3'
miRNA:   3'- -UUCGCGCGGAGG-CGuuu--------CAGCg---CGAa -5'
21582 5' -58.9 NC_004812.1 + 43695 0.67 0.690714
Target:  5'- -cGCGCuGCCUUCGCGgcGAGg-GCGCUc -3'
miRNA:   3'- uuCGCG-CGGAGGCGU--UUCagCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 38770 0.67 0.690714
Target:  5'- uAGCgGCGCC-CCGCGc-GUCGCGUc- -3'
miRNA:   3'- uUCG-CGCGGaGGCGUuuCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 121144 0.67 0.690714
Target:  5'- -cGCGCGCCgacgCCGCGgcGcugcaGCGCUg -3'
miRNA:   3'- uuCGCGCGGa---GGCGUuuCag---CGCGAa -5'
21582 5' -58.9 NC_004812.1 + 7869 0.67 0.690714
Target:  5'- uAGCgGCGCC-CCGCGc-GUCGCGUc- -3'
miRNA:   3'- uUCG-CGCGGaGGCGUuuCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 109274 0.67 0.690714
Target:  5'- cGGgGCGCgaCCGCAGAGgccuaccugCGCGCc- -3'
miRNA:   3'- uUCgCGCGgaGGCGUUUCa--------GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 101980 0.67 0.690714
Target:  5'- -cGCcCGCCgcCCGCGcgggGGGUCGCGCg- -3'
miRNA:   3'- uuCGcGCGGa-GGCGU----UUCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 77015 0.67 0.690714
Target:  5'- -cGCGCGCCUCCuccaGCAuGGccucuauggCGCGCa- -3'
miRNA:   3'- uuCGCGCGGAGG----CGUuUCa--------GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 35885 0.67 0.686653
Target:  5'- -uGCGCGCCggggggccgugcgCCGCAGGG-CGgGCg- -3'
miRNA:   3'- uuCGCGCGGa------------GGCGUUUCaGCgCGaa -5'
21582 5' -58.9 NC_004812.1 + 37261 0.67 0.680547
Target:  5'- cAGGCGCGCCgcCCGCcAGGgacgCGgGCa- -3'
miRNA:   3'- -UUCGCGCGGa-GGCGuUUCa---GCgCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.