miRNA display CGI


Results 61 - 80 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21582 5' -58.9 NC_004812.1 + 281 0.67 0.680547
Target:  5'- -cGCGCGCgCUCCGCcgccguccGGcCGCGCc- -3'
miRNA:   3'- uuCGCGCG-GAGGCGuu------UCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 6360 0.67 0.680547
Target:  5'- cAGGCGCGCCgcCCGCcAGGgacgCGgGCa- -3'
miRNA:   3'- -UUCGCGCGGa-GGCGuUUCa---GCgCGaa -5'
21582 5' -58.9 NC_004812.1 + 37261 0.67 0.680547
Target:  5'- cAGGCGCGCCgcCCGCcAGGgacgCGgGCa- -3'
miRNA:   3'- -UUCGCGCGGa-GGCGuUUCa---GCgCGaa -5'
21582 5' -58.9 NC_004812.1 + 31182 0.67 0.680547
Target:  5'- -cGCGCGCgCUCCGCcgccguccGGcCGCGCc- -3'
miRNA:   3'- uuCGCGCG-GAGGCGuu------UCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 31182 0.67 0.680547
Target:  5'- uGGGCGgucCGUCgUCCGCAGGGUCGUcccGCUg -3'
miRNA:   3'- -UUCGC---GCGG-AGGCGUUUCAGCG---CGAa -5'
21582 5' -58.9 NC_004812.1 + 94341 0.67 0.670339
Target:  5'- cGGCGCgGCCUgCGCGGGG-CGgGCg- -3'
miRNA:   3'- uUCGCG-CGGAgGCGUUUCaGCgCGaa -5'
21582 5' -58.9 NC_004812.1 + 60839 0.67 0.670339
Target:  5'- cGGGCGCGCU--CGCAGAGgCGCGUc- -3'
miRNA:   3'- -UUCGCGCGGagGCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 136504 0.67 0.670339
Target:  5'- -cGCGCGCCgCUGCGcgcGG-CGCGCUc -3'
miRNA:   3'- uuCGCGCGGaGGCGUu--UCaGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 96693 0.67 0.6601
Target:  5'- cGAGUGgGCCggcaucgCCGCGGGGUC-CGCg- -3'
miRNA:   3'- -UUCGCgCGGa------GGCGUUUCAGcGCGaa -5'
21582 5' -58.9 NC_004812.1 + 140456 0.67 0.6601
Target:  5'- cGGGCGCGCCggaGCucgaugucccGGUCGCGCa- -3'
miRNA:   3'- -UUCGCGCGGaggCGuu--------UCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 148964 0.67 0.6601
Target:  5'- aGAGCGgGUCgUCgGCGAGG-CGCGCg- -3'
miRNA:   3'- -UUCGCgCGG-AGgCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 23456 0.67 0.6601
Target:  5'- aGAGCGgGUCgUCgGCGAGG-CGCGCg- -3'
miRNA:   3'- -UUCGCgCGG-AGgCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 76136 0.67 0.6601
Target:  5'- cGGCGCGUCuguggUCCGUGuggcGUCGCGCg- -3'
miRNA:   3'- uUCGCGCGG-----AGGCGUuu--CAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 59236 0.67 0.6601
Target:  5'- uGGCGUgguugGCCUCCGUGAGGcCGuCGCg- -3'
miRNA:   3'- uUCGCG-----CGGAGGCGUUUCaGC-GCGaa -5'
21582 5' -58.9 NC_004812.1 + 75272 0.67 0.6601
Target:  5'- cAGCGCGuCCUUgGCcucgcccAGGUCGCGCc- -3'
miRNA:   3'- uUCGCGC-GGAGgCGu------UUCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 83733 0.67 0.657024
Target:  5'- -cGCGUGCCUggcggcgcagcugcCCGCGcuGUCcGCGCUg -3'
miRNA:   3'- uuCGCGCGGA--------------GGCGUuuCAG-CGCGAa -5'
21582 5' -58.9 NC_004812.1 + 141600 0.67 0.649839
Target:  5'- uGGGCGCcuGCCccgUCCGCAAccuGcCGCGCUg -3'
miRNA:   3'- -UUCGCG--CGG---AGGCGUUu--CaGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 59863 0.67 0.649839
Target:  5'- cGGCGCGCCgcaCGUAGAGcCGaCGCc- -3'
miRNA:   3'- uUCGCGCGGag-GCGUUUCaGC-GCGaa -5'
21582 5' -58.9 NC_004812.1 + 34982 0.67 0.649839
Target:  5'- gAGGCGCGCC-CCGUuguAGUagacCGCGUUg -3'
miRNA:   3'- -UUCGCGCGGaGGCGuu-UCA----GCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 41203 0.68 0.639563
Target:  5'- cGGCGCGCCg-CGCGGGGcggcgacuaCGCGCUg -3'
miRNA:   3'- uUCGCGCGGagGCGUUUCa--------GCGCGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.