miRNA display CGI


Results 101 - 120 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21582 5' -58.9 NC_004812.1 + 2451 0.68 0.59848
Target:  5'- cGAGUGCGCCUcgCCGCGgcggAAGUCcgggGCGCc- -3'
miRNA:   3'- -UUCGCGCGGA--GGCGU----UUCAG----CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 87019 0.68 0.59848
Target:  5'- -cGCGgGCCaCCGCc--GUCGCGCUc -3'
miRNA:   3'- uuCGCgCGGaGGCGuuuCAGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 93695 0.68 0.592341
Target:  5'- aGGGCGCGCCcguUCCGCGcgugcacgcgguaguAGGgcaCGCGCg- -3'
miRNA:   3'- -UUCGCGCGG---AGGCGU---------------UUCa--GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 130420 0.68 0.589275
Target:  5'- -cGCGCGCCgccgcucgcugcggcCCGCGGAGgcgGCGCUg -3'
miRNA:   3'- uuCGCGCGGa--------------GGCGUUUCag-CGCGAa -5'
21582 5' -58.9 NC_004812.1 + 4912 0.68 0.589275
Target:  5'- -cGCGCGCCgccgcucgcugcggcCCGCGGAGgcgGCGCUg -3'
miRNA:   3'- uuCGCGCGGa--------------GGCGUUUCag-CGCGAa -5'
21582 5' -58.9 NC_004812.1 + 130761 0.68 0.588254
Target:  5'- gGGGCGCGCCgagucggccgCCGCGGcccCGCGCUc -3'
miRNA:   3'- -UUCGCGCGGa---------GGCGUUucaGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 50198 0.68 0.588254
Target:  5'- cGAGCGCcgcgGCCccCCGCu--GUCGCGCg- -3'
miRNA:   3'- -UUCGCG----CGGa-GGCGuuuCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 61220 0.68 0.588254
Target:  5'- -cGCGgGCUUCCG---GGUCGCGCg- -3'
miRNA:   3'- uuCGCgCGGAGGCguuUCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 5253 0.68 0.588254
Target:  5'- gGGGCGCGCCgagucggccgCCGCGGcccCGCGCUc -3'
miRNA:   3'- -UUCGCGCGGa---------GGCGUUucaGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 95774 0.68 0.588254
Target:  5'- --aCGCGCCUCUGCGAg--CGCGCc- -3'
miRNA:   3'- uucGCGCGGAGGCGUUucaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 11494 0.69 0.578059
Target:  5'- -cGCuCGCCUCCGacgcGUCGCGCa- -3'
miRNA:   3'- uuCGcGCGGAGGCguuuCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 63008 0.69 0.578059
Target:  5'- gAAGCGCggGCCgCCGCGuccgcGAGcgCGCGCUUg -3'
miRNA:   3'- -UUCGCG--CGGaGGCGU-----UUCa-GCGCGAA- -5'
21582 5' -58.9 NC_004812.1 + 7455 0.69 0.567903
Target:  5'- -cGCcccuCGCCUCCGCGGGGacCGCGCg- -3'
miRNA:   3'- uuCGc---GCGGAGGCGUUUCa-GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 132963 0.69 0.567903
Target:  5'- -cGCcccuCGCCUCCGCGGGGacCGCGCg- -3'
miRNA:   3'- uuCGc---GCGGAGGCGUUUCa-GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 20010 0.69 0.567903
Target:  5'- cGGCGcCGUCUCCGCGcgcGUCGCGg-- -3'
miRNA:   3'- uUCGC-GCGGAGGCGUuu-CAGCGCgaa -5'
21582 5' -58.9 NC_004812.1 + 71474 0.69 0.567903
Target:  5'- cAGGCGCGCCcCCGCccg--CGCGCc- -3'
miRNA:   3'- -UUCGCGCGGaGGCGuuucaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 108577 0.69 0.567903
Target:  5'- -cGCGCGCC-CCGCucGGgcaGCGCg- -3'
miRNA:   3'- uuCGCGCGGaGGCGuuUCag-CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 43870 0.69 0.557793
Target:  5'- cGGCgGCGCCgCCGCGcGGuUCGCGCc- -3'
miRNA:   3'- uUCG-CGCGGaGGCGUuUC-AGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 135449 0.69 0.557793
Target:  5'- cAGCGCcuCCUCCGCGAGcugCGCGCc- -3'
miRNA:   3'- uUCGCGc-GGAGGCGUUUca-GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 102832 0.69 0.557793
Target:  5'- cGGCGCGCCUCCaCGccGgcgaCGCGCa- -3'
miRNA:   3'- uUCGCGCGGAGGcGUuuCa---GCGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.