miRNA display CGI


Results 41 - 60 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21582 5' -58.9 NC_004812.1 + 31182 0.67 0.680547
Target:  5'- uGGGCGgucCGUCgUCCGCAGGGUCGUcccGCUg -3'
miRNA:   3'- -UUCGC---GCGG-AGGCGUUUCAGCG---CGAa -5'
21582 5' -58.9 NC_004812.1 + 31182 0.67 0.680547
Target:  5'- -cGCGCGCgCUCCGCcgccguccGGcCGCGCc- -3'
miRNA:   3'- uuCGCGCG-GAGGCGuu------UCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 31344 0.68 0.629281
Target:  5'- -cGCGCGCCcgCCGCGAgcccgggccgccGG-CGCGCc- -3'
miRNA:   3'- uuCGCGCGGa-GGCGUU------------UCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 34674 0.66 0.750363
Target:  5'- cAGCGCGUCccccagCUGCGAGG-CGUGCg- -3'
miRNA:   3'- uUCGCGCGGa-----GGCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 34786 0.69 0.547734
Target:  5'- -uGCGcCGCCUcCCGC---GUCGCGCUc -3'
miRNA:   3'- uuCGC-GCGGA-GGCGuuuCAGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 34982 0.67 0.649839
Target:  5'- gAGGCGCGCC-CCGUuguAGUagacCGCGUUg -3'
miRNA:   3'- -UUCGCGCGGaGGCGuu-UCA----GCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 35885 0.67 0.686653
Target:  5'- -uGCGCGCCggggggccgugcgCCGCAGGG-CGgGCg- -3'
miRNA:   3'- uuCGCGCGGa------------GGCGUUUCaGCgCGaa -5'
21582 5' -58.9 NC_004812.1 + 36253 0.66 0.750363
Target:  5'- -cGCGCGCCcCCGCG-GGUUGCa--- -3'
miRNA:   3'- uuCGCGCGGaGGCGUuUCAGCGcgaa -5'
21582 5' -58.9 NC_004812.1 + 37261 0.67 0.680547
Target:  5'- cAGGCGCGCCgcCCGCcAGGgacgCGgGCa- -3'
miRNA:   3'- -UUCGCGCGGa-GGCGuUUCa---GCgCGaa -5'
21582 5' -58.9 NC_004812.1 + 38770 0.67 0.690714
Target:  5'- uAGCgGCGCC-CCGCGc-GUCGCGUc- -3'
miRNA:   3'- uUCG-CGCGGaGGCGUuuCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 39497 0.67 0.700833
Target:  5'- uGGCGCGCCgcCCG-GAGGcCGCGCc- -3'
miRNA:   3'- uUCGCGCGGa-GGCgUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 41203 0.68 0.639563
Target:  5'- cGGCGCGCCg-CGCGGGGcggcgacuaCGCGCUg -3'
miRNA:   3'- uUCGCGCGGagGCGUUUCa--------GCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 43695 0.67 0.690714
Target:  5'- -cGCGCuGCCUUCGCGgcGAGg-GCGCUc -3'
miRNA:   3'- uuCGCG-CGGAGGCGU--UUCagCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 43870 0.69 0.557793
Target:  5'- cGGCgGCGCCgCCGCGcGGuUCGCGCc- -3'
miRNA:   3'- uUCG-CGCGGaGGCGUuUC-AGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 44256 0.66 0.740629
Target:  5'- -cGCGaggGCCgauagCCGCu-GGUCGCGCg- -3'
miRNA:   3'- uuCGCg--CGGa----GGCGuuUCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 46954 0.7 0.466983
Target:  5'- -cGCGCGUC-CCGCGAGaugcgaucccagucGUCGCGCg- -3'
miRNA:   3'- uuCGCGCGGaGGCGUUU--------------CAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 47326 0.71 0.45119
Target:  5'- cGGGCGCgcagguagGCCUCUGC--GGUCGCGCc- -3'
miRNA:   3'- -UUCGCG--------CGGAGGCGuuUCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 47998 0.68 0.636478
Target:  5'- -cGCGCGCCUCguggUGCAcgaagagcgugguuAGGcCGCGCUg -3'
miRNA:   3'- uuCGCGCGGAG----GCGU--------------UUCaGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 49978 0.66 0.740629
Target:  5'- gGAGCgGCGaCUCCGguGAGcUgGCGCUg -3'
miRNA:   3'- -UUCG-CGCgGAGGCguUUC-AgCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 50198 0.68 0.588254
Target:  5'- cGAGCGCcgcgGCCccCCGCu--GUCGCGCg- -3'
miRNA:   3'- -UUCGCG----CGGa-GGCGuuuCAGCGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.