miRNA display CGI


Results 81 - 100 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21582 5' -58.9 NC_004812.1 + 73144 0.73 0.348862
Target:  5'- cGGCGCGCCgCCGCGGAccagcaCGCGCUg -3'
miRNA:   3'- uUCGCGCGGaGGCGUUUca----GCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 73895 0.72 0.397921
Target:  5'- cGGCG-GCCgcggCCGCcGAGUCGCGCc- -3'
miRNA:   3'- uUCGCgCGGa---GGCGuUUCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 74253 0.74 0.290411
Target:  5'- -cGCGCGUCUCUGCGAGGcCGCGg-- -3'
miRNA:   3'- uuCGCGCGGAGGCGUUUCaGCGCgaa -5'
21582 5' -58.9 NC_004812.1 + 75272 0.67 0.6601
Target:  5'- cAGCGCGuCCUUgGCcucgcccAGGUCGCGCc- -3'
miRNA:   3'- uUCGCGC-GGAGgCGu------UUCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 76136 0.67 0.6601
Target:  5'- cGGCGCGUCuguggUCCGUGuggcGUCGCGCg- -3'
miRNA:   3'- uUCGCGCGG-----AGGCGUuu--CAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 76137 0.69 0.547734
Target:  5'- cGGCGCGCCgCCGCGucGcCGCGa-- -3'
miRNA:   3'- uUCGCGCGGaGGCGUuuCaGCGCgaa -5'
21582 5' -58.9 NC_004812.1 + 76839 0.77 0.201948
Target:  5'- gGGGCGCGCCUgCGCGgcGUCGgGCa- -3'
miRNA:   3'- -UUCGCGCGGAgGCGUuuCAGCgCGaa -5'
21582 5' -58.9 NC_004812.1 + 77015 0.67 0.690714
Target:  5'- -cGCGCGCCUCCuccaGCAuGGccucuauggCGCGCa- -3'
miRNA:   3'- uuCGCGCGGAGG----CGUuUCa--------GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 79045 0.68 0.619001
Target:  5'- -cGUG-GCCUCCGCGccGGUCGUGCc- -3'
miRNA:   3'- uuCGCgCGGAGGCGUu-UCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 79357 0.7 0.508136
Target:  5'- cAGCgGCGCCcCCGCGAGGgcaGCGCc- -3'
miRNA:   3'- uUCG-CGCGGaGGCGUUUCag-CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 80919 0.7 0.498422
Target:  5'- --cUGC-CCUCCGCGGAGUCGgGCg- -3'
miRNA:   3'- uucGCGcGGAGGCGUUUCAGCgCGaa -5'
21582 5' -58.9 NC_004812.1 + 81701 0.66 0.740629
Target:  5'- -cGCGCGCCUgcaCGCGcgccuGGaCGCGCUc -3'
miRNA:   3'- uuCGCGCGGAg--GCGUu----UCaGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 82041 0.72 0.381083
Target:  5'- uGGCcCGCCUCCGCGAggacguGGUgGCGCg- -3'
miRNA:   3'- uUCGcGCGGAGGCGUU------UCAgCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 82360 0.66 0.7308
Target:  5'- -cGCG-GCCU-CGCAGAGaCGCGCg- -3'
miRNA:   3'- uuCGCgCGGAgGCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 83285 0.7 0.508136
Target:  5'- cGAGCGCGgCgcuggCCGCGcuguGGUCGUGCa- -3'
miRNA:   3'- -UUCGCGCgGa----GGCGUu---UCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 83549 0.72 0.381083
Target:  5'- gGAGCGCgGUCUCCGgGAGGcCGUGCg- -3'
miRNA:   3'- -UUCGCG-CGGAGGCgUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 83638 0.66 0.759034
Target:  5'- cGGgGCGCCgacgCCGCccugcgaGAGGUCGUGUc- -3'
miRNA:   3'- uUCgCGCGGa---GGCG-------UUUCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 83733 0.67 0.657024
Target:  5'- -cGCGUGCCUggcggcgcagcugcCCGCGcuGUCcGCGCUg -3'
miRNA:   3'- uuCGCGCGGA--------------GGCGUuuCAG-CGCGAa -5'
21582 5' -58.9 NC_004812.1 + 84746 0.71 0.45119
Target:  5'- -uGCGCGCgCUCCuGCAGGGgaUCGUGCg- -3'
miRNA:   3'- uuCGCGCG-GAGG-CGUUUC--AGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 85289 0.66 0.740629
Target:  5'- cAGCGgGCC-CCaCGAAGcCGCGCa- -3'
miRNA:   3'- uUCGCgCGGaGGcGUUUCaGCGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.