Results 101 - 120 of 186 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21582 | 5' | -58.9 | NC_004812.1 | + | 85419 | 0.74 | 0.30427 |
Target: 5'- uGGCGCGgC-CCGCGGuGUCGCGCUc -3' miRNA: 3'- uUCGCGCgGaGGCGUUuCAGCGCGAa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 86950 | 0.66 | 0.740629 |
Target: 5'- cGGCGCGCCaaaCCGCAGAccuUCGcCGCc- -3' miRNA: 3'- uUCGCGCGGa--GGCGUUUc--AGC-GCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 87019 | 0.68 | 0.59848 |
Target: 5'- -cGCGgGCCaCCGCc--GUCGCGCUc -3' miRNA: 3'- uuCGCgCGGaGGCGuuuCAGCGCGAa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 89961 | 0.68 | 0.629281 |
Target: 5'- cGGCGCGCCUCC-CGA---CGCGCc- -3' miRNA: 3'- uUCGCGCGGAGGcGUUucaGCGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 90310 | 0.67 | 0.704864 |
Target: 5'- uGGGCGcCGCCagCCGCGAGGcgcucauccucgccuUCGUGCa- -3' miRNA: 3'- -UUCGC-GCGGa-GGCGUUUC---------------AGCGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 91505 | 0.7 | 0.469799 |
Target: 5'- gGGGcCGCGCCagccacuccUCCGCGGGG-CGCGCg- -3' miRNA: 3'- -UUC-GCGCGG---------AGGCGUUUCaGCGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 92825 | 0.66 | 0.710892 |
Target: 5'- -uGCGCGCCggCCaGUAccccggccuGAGUCGCGUg- -3' miRNA: 3'- uuCGCGCGGa-GG-CGU---------UUCAGCGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 93102 | 0.66 | 0.7308 |
Target: 5'- cAGCGgGCgCUUCGCGGuGUCGgGCg- -3' miRNA: 3'- uUCGCgCG-GAGGCGUUuCAGCgCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 93695 | 0.68 | 0.592341 |
Target: 5'- aGGGCGCGCCcguUCCGCGcgugcacgcgguaguAGGgcaCGCGCg- -3' miRNA: 3'- -UUCGCGCGG---AGGCGU---------------UUCa--GCGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 94225 | 0.7 | 0.488792 |
Target: 5'- gGGGCGCGCUUCagGCGAccGUCGUGCa- -3' miRNA: 3'- -UUCGCGCGGAGg-CGUUu-CAGCGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 94341 | 0.67 | 0.670339 |
Target: 5'- cGGCGCgGCCUgCGCGGGG-CGgGCg- -3' miRNA: 3'- uUCGCG-CGGAgGCGUUUCaGCgCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 95411 | 0.68 | 0.619001 |
Target: 5'- -cGCGCGCC-CgGCGAGuGaCGCGCUg -3' miRNA: 3'- uuCGCGCGGaGgCGUUU-CaGCGCGAa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 95774 | 0.68 | 0.588254 |
Target: 5'- --aCGCGCCUCUGCGAg--CGCGCc- -3' miRNA: 3'- uucGCGCGGAGGCGUUucaGCGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 96186 | 0.67 | 0.700833 |
Target: 5'- -cGCGCuCCgaacCCGCAAcguggacgcGGUCGCGCg- -3' miRNA: 3'- uuCGCGcGGa---GGCGUU---------UCAGCGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 96541 | 0.71 | 0.45119 |
Target: 5'- -cGCGUGCgCUCCGCccugccgcuGUCGCGCg- -3' miRNA: 3'- uuCGCGCG-GAGGCGuuu------CAGCGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 96693 | 0.67 | 0.6601 |
Target: 5'- cGAGUGgGCCggcaucgCCGCGGGGUC-CGCg- -3' miRNA: 3'- -UUCGCgCGGa------GGCGUUUCAGcGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 96763 | 0.69 | 0.547734 |
Target: 5'- cGGCGCGCCgUCGCGAGGagGCGg-- -3' miRNA: 3'- uUCGCGCGGaGGCGUUUCagCGCgaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 97136 | 0.76 | 0.222962 |
Target: 5'- cGGCGCGCCucUCCGC--GGUCGCGUg- -3' miRNA: 3'- uUCGCGCGG--AGGCGuuUCAGCGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 98359 | 0.67 | 0.700833 |
Target: 5'- -cGCGCGCC-CCau--GGUCGUGCUg -3' miRNA: 3'- uuCGCGCGGaGGcguuUCAGCGCGAa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 98588 | 0.71 | 0.460445 |
Target: 5'- gAGGgGCGCgUCCGUcAGGUCGuCGCUc -3' miRNA: 3'- -UUCgCGCGgAGGCGuUUCAGC-GCGAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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