miRNA display CGI


Results 121 - 140 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21582 5' -58.9 NC_004812.1 + 100337 0.68 0.639563
Target:  5'- cGAGCGgGCCgCCGCGGGcGagGCGCa- -3'
miRNA:   3'- -UUCGCgCGGaGGCGUUU-CagCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 100364 0.77 0.182677
Target:  5'- gGGGCGCGCCcCCGCGgacGAGUCgGCGCg- -3'
miRNA:   3'- -UUCGCGCGGaGGCGU---UUCAG-CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 100960 0.73 0.341116
Target:  5'- gGGGCGCGCCgCCGCGGAcGUC-CGCg- -3'
miRNA:   3'- -UUCGCGCGGaGGCGUUU-CAGcGCGaa -5'
21582 5' -58.9 NC_004812.1 + 101980 0.67 0.690714
Target:  5'- -cGCcCGCCgcCCGCGcgggGGGUCGCGCg- -3'
miRNA:   3'- uuCGcGCGGa-GGCGU----UUCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 102832 0.69 0.557793
Target:  5'- cGGCGCGCCUCCaCGccGgcgaCGCGCa- -3'
miRNA:   3'- uUCGCGCGGAGGcGUuuCa---GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 103713 0.7 0.498422
Target:  5'- cGGCGCGCCgggaGCGAGGgaaacggCGCGCUc -3'
miRNA:   3'- uUCGCGCGGagg-CGUUUCa------GCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 105473 0.7 0.479249
Target:  5'- -cGCGCGCCUCCcCGGGGUaguaggGCGCg- -3'
miRNA:   3'- uuCGCGCGGAGGcGUUUCAg-----CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 108577 0.69 0.567903
Target:  5'- -cGCGCGCC-CCGCucGGgcaGCGCg- -3'
miRNA:   3'- uuCGCGCGGaGGCGuuUCag-CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 109274 0.67 0.690714
Target:  5'- cGGgGCGCgaCCGCAGAGgccuaccugCGCGCc- -3'
miRNA:   3'- uUCgCGCGgaGGCGUUUCa--------GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 112312 0.72 0.372844
Target:  5'- cGAGuCGCGCCUcgggcggcuggCCGCGGaggcGGUCGCGCg- -3'
miRNA:   3'- -UUC-GCGCGGA-----------GGCGUU----UCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 112563 0.69 0.537734
Target:  5'- gGGGCGCGCCgUCCGaCGcgcAGGUgaCGCGCg- -3'
miRNA:   3'- -UUCGCGCGG-AGGC-GU---UUCA--GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 112816 0.66 0.7308
Target:  5'- uGGGCGCGCCUCggaagGCGgcGUCgGCGUUc -3'
miRNA:   3'- -UUCGCGCGGAGg----CGUuuCAG-CGCGAa -5'
21582 5' -58.9 NC_004812.1 + 112912 0.69 0.537734
Target:  5'- gGAGCGC-CCUcgCCGCGAAGgcaGCGCg- -3'
miRNA:   3'- -UUCGCGcGGA--GGCGUUUCag-CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 113235 0.74 0.297278
Target:  5'- gGAGCGCGCggCCGCGGAG-CGCGUc- -3'
miRNA:   3'- -UUCGCGCGgaGGCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 114596 0.66 0.714898
Target:  5'- -cGCGCGCCcCCGCcaucgacccggcgauGGGG-CGCGCg- -3'
miRNA:   3'- uuCGCGCGGaGGCG---------------UUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 116602 0.66 0.740629
Target:  5'- -cGCGgGCCgCCGCGucuGUCGCGg-- -3'
miRNA:   3'- uuCGCgCGGaGGCGUuu-CAGCGCgaa -5'
21582 5' -58.9 NC_004812.1 + 117111 0.7 0.508136
Target:  5'- gAGGCGCgGCCUCCGgGcGG-CGCGCc- -3'
miRNA:   3'- -UUCGCG-CGGAGGCgUuUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 117815 0.66 0.740629
Target:  5'- cGAGaGCGCC-CCGCAGAccaCGCGCg- -3'
miRNA:   3'- -UUCgCGCGGaGGCGUUUca-GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 119878 0.74 0.290411
Target:  5'- cGAGCGCGCCgccggcCCGCAGAGcccgcCGCGCc- -3'
miRNA:   3'- -UUCGCGCGGa-----GGCGUUUCa----GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 121144 0.67 0.690714
Target:  5'- -cGCGCGCCgacgCCGCGgcGcugcaGCGCUg -3'
miRNA:   3'- uuCGCGCGGa---GGCGUuuCag---CGCGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.