miRNA display CGI


Results 21 - 40 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21582 5' -58.9 NC_004812.1 + 138391 0.66 0.740629
Target:  5'- cGAGCgGCGCCUCgaCGCGgaguacugggGGGUCGCGg-- -3'
miRNA:   3'- -UUCG-CGCGGAG--GCGU----------UUCAGCGCgaa -5'
21582 5' -58.9 NC_004812.1 + 138245 0.66 0.719889
Target:  5'- -cGCGgGCCcgcguacgCCGCGGcggccgcGGUCGCGCg- -3'
miRNA:   3'- uuCGCgCGGa-------GGCGUU-------UCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 136921 0.66 0.7308
Target:  5'- -cGCGCGCCgCCGCGcuGgacgugaaCGCGCa- -3'
miRNA:   3'- uuCGCGCGGaGGCGUuuCa-------GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 136504 0.67 0.670339
Target:  5'- -cGCGCGCCgCUGCGcgcGG-CGCGCUc -3'
miRNA:   3'- uuCGCGCGGaGGCGUu--UCaGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 136251 0.74 0.318631
Target:  5'- cAAGCGCGaCUuuGCGGAGgCGCGCUUu -3'
miRNA:   3'- -UUCGCGCgGAggCGUUUCaGCGCGAA- -5'
21582 5' -58.9 NC_004812.1 + 135449 0.69 0.557793
Target:  5'- cAGCGCcuCCUCCGCGAGcugCGCGCc- -3'
miRNA:   3'- uUCGCGc-GGAGGCGUUUca-GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 134835 0.68 0.619001
Target:  5'- uGGCGCGCC-CCGgGGGGUgGCGa-- -3'
miRNA:   3'- uUCGCGCGGaGGCgUUUCAgCGCgaa -5'
21582 5' -58.9 NC_004812.1 + 134744 0.69 0.557793
Target:  5'- gAGGCGCGCCUggCCGCGGGGaacaaCGUGUg- -3'
miRNA:   3'- -UUCGCGCGGA--GGCGUUUCa----GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 132963 0.69 0.567903
Target:  5'- -cGCcccuCGCCUCCGCGGGGacCGCGCg- -3'
miRNA:   3'- uuCGc---GCGGAGGCGUUUCa-GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 132849 0.66 0.759992
Target:  5'- cGAGCGCGCgCggUGCuugguGUCGCGCa- -3'
miRNA:   3'- -UUCGCGCG-GagGCGuuu--CAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 130826 0.66 0.750363
Target:  5'- cGAGCGCGUCgUCCGCcGGGgCGcCGCc- -3'
miRNA:   3'- -UUCGCGCGG-AGGCGuUUCaGC-GCGaa -5'
21582 5' -58.9 NC_004812.1 + 130761 0.68 0.588254
Target:  5'- gGGGCGCGCCgagucggccgCCGCGGcccCGCGCUc -3'
miRNA:   3'- -UUCGCGCGGa---------GGCGUUucaGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 130420 0.68 0.589275
Target:  5'- -cGCGCGCCgccgcucgcugcggcCCGCGGAGgcgGCGCUg -3'
miRNA:   3'- uuCGCGCGGa--------------GGCGUUUCag-CGCGAa -5'
21582 5' -58.9 NC_004812.1 + 129134 0.66 0.720885
Target:  5'- -uGCGC-CCUCCGCGccGGGgcgGCGCUg -3'
miRNA:   3'- uuCGCGcGGAGGCGU--UUCag-CGCGAa -5'
21582 5' -58.9 NC_004812.1 + 129107 0.68 0.608732
Target:  5'- cGGGCGCGCCg--GCGAGGagcucUUGCGCUUg -3'
miRNA:   3'- -UUCGCGCGGaggCGUUUC-----AGCGCGAA- -5'
21582 5' -58.9 NC_004812.1 + 127959 0.68 0.59848
Target:  5'- cGAGUGCGCCUcgCCGCGgcggAAGUCcgggGCGCc- -3'
miRNA:   3'- -UUCGCGCGGA--GGCGU----UUCAG----CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 127686 0.71 0.424056
Target:  5'- cGGGCGCGCaUUCCGCGAaccGGagGCGCg- -3'
miRNA:   3'- -UUCGCGCG-GAGGCGUU---UCagCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 127246 0.77 0.201948
Target:  5'- -cGCGCGCCUCCGCGgcccGAGccCGCGCc- -3'
miRNA:   3'- uuCGCGCGGAGGCGU----UUCa-GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 127007 0.67 0.700833
Target:  5'- gGAGCGCcgGCCggcCCGCGccGcCGCGCg- -3'
miRNA:   3'- -UUCGCG--CGGa--GGCGUuuCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 126662 0.7 0.51793
Target:  5'- -cGCGCGCC-CCGuCGAcgccGUCGUGCUg -3'
miRNA:   3'- uuCGCGCGGaGGC-GUUu---CAGCGCGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.