miRNA display CGI


Results 61 - 80 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21582 5' -58.9 NC_004812.1 + 103713 0.7 0.498422
Target:  5'- cGGCGCGCCgggaGCGAGGgaaacggCGCGCUc -3'
miRNA:   3'- uUCGCGCGGagg-CGUUUCa------GCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 102832 0.69 0.557793
Target:  5'- cGGCGCGCCUCCaCGccGgcgaCGCGCa- -3'
miRNA:   3'- uUCGCGCGGAGGcGUuuCa---GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 101980 0.67 0.690714
Target:  5'- -cGCcCGCCgcCCGCGcgggGGGUCGCGCg- -3'
miRNA:   3'- uuCGcGCGGa-GGCGU----UUCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 100960 0.73 0.341116
Target:  5'- gGGGCGCGCCgCCGCGGAcGUC-CGCg- -3'
miRNA:   3'- -UUCGCGCGGaGGCGUUU-CAGcGCGaa -5'
21582 5' -58.9 NC_004812.1 + 100364 0.77 0.182677
Target:  5'- gGGGCGCGCCcCCGCGgacGAGUCgGCGCg- -3'
miRNA:   3'- -UUCGCGCGGaGGCGU---UUCAG-CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 100337 0.68 0.639563
Target:  5'- cGAGCGgGCCgCCGCGGGcGagGCGCa- -3'
miRNA:   3'- -UUCGCgCGGaGGCGUUU-CagCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 98588 0.71 0.460445
Target:  5'- gAGGgGCGCgUCCGUcAGGUCGuCGCUc -3'
miRNA:   3'- -UUCgCGCGgAGGCGuUUCAGC-GCGAa -5'
21582 5' -58.9 NC_004812.1 + 98359 0.67 0.700833
Target:  5'- -cGCGCGCC-CCau--GGUCGUGCUg -3'
miRNA:   3'- uuCGCGCGGaGGcguuUCAGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 97136 0.76 0.222962
Target:  5'- cGGCGCGCCucUCCGC--GGUCGCGUg- -3'
miRNA:   3'- uUCGCGCGG--AGGCGuuUCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 96763 0.69 0.547734
Target:  5'- cGGCGCGCCgUCGCGAGGagGCGg-- -3'
miRNA:   3'- uUCGCGCGGaGGCGUUUCagCGCgaa -5'
21582 5' -58.9 NC_004812.1 + 96693 0.67 0.6601
Target:  5'- cGAGUGgGCCggcaucgCCGCGGGGUC-CGCg- -3'
miRNA:   3'- -UUCGCgCGGa------GGCGUUUCAGcGCGaa -5'
21582 5' -58.9 NC_004812.1 + 96541 0.71 0.45119
Target:  5'- -cGCGUGCgCUCCGCccugccgcuGUCGCGCg- -3'
miRNA:   3'- uuCGCGCG-GAGGCGuuu------CAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 96186 0.67 0.700833
Target:  5'- -cGCGCuCCgaacCCGCAAcguggacgcGGUCGCGCg- -3'
miRNA:   3'- uuCGCGcGGa---GGCGUU---------UCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 95774 0.68 0.588254
Target:  5'- --aCGCGCCUCUGCGAg--CGCGCc- -3'
miRNA:   3'- uucGCGCGGAGGCGUUucaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 95411 0.68 0.619001
Target:  5'- -cGCGCGCC-CgGCGAGuGaCGCGCUg -3'
miRNA:   3'- uuCGCGCGGaGgCGUUU-CaGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 94341 0.67 0.670339
Target:  5'- cGGCGCgGCCUgCGCGGGG-CGgGCg- -3'
miRNA:   3'- uUCGCG-CGGAgGCGUUUCaGCgCGaa -5'
21582 5' -58.9 NC_004812.1 + 94225 0.7 0.488792
Target:  5'- gGGGCGCGCUUCagGCGAccGUCGUGCa- -3'
miRNA:   3'- -UUCGCGCGGAGg-CGUUu-CAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 93695 0.68 0.592341
Target:  5'- aGGGCGCGCCcguUCCGCGcgugcacgcgguaguAGGgcaCGCGCg- -3'
miRNA:   3'- -UUCGCGCGG---AGGCGU---------------UUCa--GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 93102 0.66 0.7308
Target:  5'- cAGCGgGCgCUUCGCGGuGUCGgGCg- -3'
miRNA:   3'- uUCGCgCG-GAGGCGUUuCAGCgCGaa -5'
21582 5' -58.9 NC_004812.1 + 92825 0.66 0.710892
Target:  5'- -uGCGCGCCggCCaGUAccccggccuGAGUCGCGUg- -3'
miRNA:   3'- uuCGCGCGGa-GG-CGU---------UUCAGCGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.