miRNA display CGI


Results 101 - 120 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21582 5' -58.9 NC_004812.1 + 76137 0.69 0.547734
Target:  5'- cGGCGCGCCgCCGCGucGcCGCGa-- -3'
miRNA:   3'- uUCGCGCGGaGGCGUuuCaGCGCgaa -5'
21582 5' -58.9 NC_004812.1 + 76136 0.67 0.6601
Target:  5'- cGGCGCGUCuguggUCCGUGuggcGUCGCGCg- -3'
miRNA:   3'- uUCGCGCGG-----AGGCGUuu--CAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 75272 0.67 0.6601
Target:  5'- cAGCGCGuCCUUgGCcucgcccAGGUCGCGCc- -3'
miRNA:   3'- uUCGCGC-GGAGgCGu------UUCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 74253 0.74 0.290411
Target:  5'- -cGCGCGUCUCUGCGAGGcCGCGg-- -3'
miRNA:   3'- uuCGCGCGGAGGCGUUUCaGCGCgaa -5'
21582 5' -58.9 NC_004812.1 + 73895 0.72 0.397921
Target:  5'- cGGCG-GCCgcggCCGCcGAGUCGCGCc- -3'
miRNA:   3'- uUCGCgCGGa---GGCGuUUCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 73144 0.73 0.348862
Target:  5'- cGGCGCGCCgCCGCGGAccagcaCGCGCUg -3'
miRNA:   3'- uUCGCGCGGaGGCGUUUca----GCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 73055 0.68 0.619001
Target:  5'- gGGGCGCacgGCCUCC-CGGAGacCGCGCUc -3'
miRNA:   3'- -UUCGCG---CGGAGGcGUUUCa-GCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 72508 0.69 0.556785
Target:  5'- gGGGCGCGCCgCCGCcGGGGUCcgggccgGCGCc- -3'
miRNA:   3'- -UUCGCGCGGaGGCG-UUUCAG-------CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 71474 0.69 0.567903
Target:  5'- cAGGCGCGCCcCCGCccg--CGCGCc- -3'
miRNA:   3'- -UUCGCGCGGaGGCGuuucaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 71272 0.72 0.406518
Target:  5'- gGGGCGCGCCgCCG-AAAGUCGcCGCc- -3'
miRNA:   3'- -UUCGCGCGGaGGCgUUUCAGC-GCGaa -5'
21582 5' -58.9 NC_004812.1 + 68893 0.66 0.750363
Target:  5'- -cGCGcCGCCUcCCGCucgcGGUCGCcauGCUg -3'
miRNA:   3'- uuCGC-GCGGA-GGCGuu--UCAGCG---CGAa -5'
21582 5' -58.9 NC_004812.1 + 68193 0.7 0.508136
Target:  5'- gGGGCGCGCCggaCGCccGGcCGCGCg- -3'
miRNA:   3'- -UUCGCGCGGag-GCGuuUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 67387 0.7 0.51793
Target:  5'- -cGCGgGCCUCCGCc--GcCGCGCg- -3'
miRNA:   3'- uuCGCgCGGAGGCGuuuCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 65095 0.69 0.526807
Target:  5'- -cGCGCGCC-CCGCGGAGgaguggcUgGCGCg- -3'
miRNA:   3'- uuCGCGCGGaGGCGUUUC-------AgCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 63008 0.69 0.578059
Target:  5'- gAAGCGCggGCCgCCGCGuccgcGAGcgCGCGCUUg -3'
miRNA:   3'- -UUCGCG--CGGaGGCGU-----UUCa-GCGCGAA- -5'
21582 5' -58.9 NC_004812.1 + 62398 0.66 0.719889
Target:  5'- gAAGCGCGCC-CCGCGggucuacugcgggGGGgaggaGCGCg- -3'
miRNA:   3'- -UUCGCGCGGaGGCGU-------------UUCag---CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 62348 0.67 0.700833
Target:  5'- cGGCGCGCgC-CCGCGgcgcguGGGUCgGCGCg- -3'
miRNA:   3'- uUCGCGCG-GaGGCGU------UUCAG-CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 62257 0.73 0.341116
Target:  5'- cAGCGCGCCggggCCGCGccG-CGCGCg- -3'
miRNA:   3'- uUCGCGCGGa---GGCGUuuCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 61220 0.68 0.588254
Target:  5'- -cGCGgGCUUCCG---GGUCGCGCg- -3'
miRNA:   3'- uuCGCgCGGAGGCguuUCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 60839 0.67 0.670339
Target:  5'- cGGGCGCGCU--CGCAGAGgCGCGUc- -3'
miRNA:   3'- -UUCGCGCGGagGCGUUUCaGCGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.