miRNA display CGI


Results 81 - 100 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21582 5' -58.9 NC_004812.1 + 127959 0.68 0.59848
Target:  5'- cGAGUGCGCCUcgCCGCGgcggAAGUCcgggGCGCc- -3'
miRNA:   3'- -UUCGCGCGGA--GGCGU----UUCAG----CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 147076 0.68 0.608732
Target:  5'- gAAGCgGgGCCUCCGCAGccgaaCGCGCg- -3'
miRNA:   3'- -UUCG-CgCGGAGGCGUUuca--GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 96763 0.69 0.547734
Target:  5'- cGGCGCGCCgUCGCGAGGagGCGg-- -3'
miRNA:   3'- uUCGCGCGGaGGCGUUUCagCGCgaa -5'
21582 5' -58.9 NC_004812.1 + 15450 0.69 0.547734
Target:  5'- -cGCGCGCCUUCGaCucGG-CGCGCa- -3'
miRNA:   3'- uuCGCGCGGAGGC-GuuUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 68193 0.7 0.508136
Target:  5'- gGGGCGCGCCggaCGCccGGcCGCGCg- -3'
miRNA:   3'- -UUCGCGCGGag-GCGuuUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 67387 0.7 0.51793
Target:  5'- -cGCGgGCCUCCGCc--GcCGCGCg- -3'
miRNA:   3'- uuCGCgCGGAGGCGuuuCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 20299 0.7 0.51793
Target:  5'- cGGCGCGCCggCGCAgcG-CGCGCg- -3'
miRNA:   3'- uUCGCGCGGagGCGUuuCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 65095 0.69 0.526807
Target:  5'- -cGCGCGCC-CCGCGGAGgaguggcUgGCGCg- -3'
miRNA:   3'- uuCGCGCGGaGGCGUUUC-------AgCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 26971 0.69 0.537734
Target:  5'- aGGGgGCGCC-CCGCGAAcucggCGCGCUc -3'
miRNA:   3'- -UUCgCGCGGaGGCGUUUca---GCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 112912 0.69 0.537734
Target:  5'- gGAGCGC-CCUcgCCGCGAAGgcaGCGCg- -3'
miRNA:   3'- -UUCGCGcGGA--GGCGUUUCag-CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 144254 0.69 0.537734
Target:  5'- cGGGCGCGCCccCCGCcAAGGUgGUGUg- -3'
miRNA:   3'- -UUCGCGCGGa-GGCG-UUUCAgCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 28917 0.69 0.541727
Target:  5'- uGGCGCGCCUCCgguucGCGGAaugccgcccggggacGUCGUGCc- -3'
miRNA:   3'- uUCGCGCGGAGG-----CGUUU---------------CAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 34786 0.69 0.547734
Target:  5'- -uGCGcCGCCUcCCGC---GUCGCGCUc -3'
miRNA:   3'- uuCGC-GCGGA-GGCGuuuCAGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 76137 0.69 0.547734
Target:  5'- cGGCGCGCCgCCGCGucGcCGCGa-- -3'
miRNA:   3'- uUCGCGCGGaGGCGUuuCaGCGCgaa -5'
21582 5' -58.9 NC_004812.1 + 136251 0.74 0.318631
Target:  5'- cAAGCGCGaCUuuGCGGAGgCGCGCUUu -3'
miRNA:   3'- -UUCGCGCgGAggCGUUUCaGCGCGAA- -5'
21582 5' -58.9 NC_004812.1 + 85419 0.74 0.30427
Target:  5'- uGGCGCGgC-CCGCGGuGUCGCGCUc -3'
miRNA:   3'- uUCGCGCgGaGGCGUUuCAGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 150779 0.74 0.290411
Target:  5'- cGAGCGCGCCgccggcCCGCAGAGcccgcCGCGCc- -3'
miRNA:   3'- -UUCGCGCGGa-----GGCGUUUCa----GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 74253 0.74 0.290411
Target:  5'- -cGCGCGUCUCUGCGAGGcCGCGg-- -3'
miRNA:   3'- uuCGCGCGGAGGCGUUUCaGCGCgaa -5'
21582 5' -58.9 NC_004812.1 + 1738 0.77 0.201948
Target:  5'- -cGCGCGCCUCCGCGgcccGAGccCGCGCc- -3'
miRNA:   3'- uuCGCGCGGAGGCGU----UUCa-GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 132849 0.66 0.759992
Target:  5'- cGAGCGCGCgCggUGCuugguGUCGCGCa- -3'
miRNA:   3'- -UUCGCGCG-GagGCGuuu--CAGCGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.