miRNA display CGI


Results 61 - 80 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21582 5' -58.9 NC_004812.1 + 5253 0.68 0.588254
Target:  5'- gGGGCGCGCCgagucggccgCCGCGGcccCGCGCUc -3'
miRNA:   3'- -UUCGCGCGGa---------GGCGUUucaGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 87019 0.68 0.59848
Target:  5'- -cGCGgGCCaCCGCc--GUCGCGCUc -3'
miRNA:   3'- uuCGCgCGGaGGCGuuuCAGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 136251 0.74 0.318631
Target:  5'- cAAGCGCGaCUuuGCGGAGgCGCGCUUu -3'
miRNA:   3'- -UUCGCGCgGAggCGUUUCaGCGCGAA- -5'
21582 5' -58.9 NC_004812.1 + 112312 0.72 0.372844
Target:  5'- cGAGuCGCGCCUcgggcggcuggCCGCGGaggcGGUCGCGCg- -3'
miRNA:   3'- -UUC-GCGCGGA-----------GGCGUU----UCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 196 0.71 0.45119
Target:  5'- -cGCGCGCCgCCGgGggagggcccGGGUCGCGCa- -3'
miRNA:   3'- uuCGCGCGGaGGCgU---------UUCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 91505 0.7 0.469799
Target:  5'- gGGGcCGCGCCagccacuccUCCGCGGGG-CGCGCg- -3'
miRNA:   3'- -UUC-GCGCGG---------AGGCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 25863 0.7 0.498422
Target:  5'- cGGCGCGCCccgacggCCGCGAGGcCGaCGCc- -3'
miRNA:   3'- uUCGCGCGGa------GGCGUUUCaGC-GCGaa -5'
21582 5' -58.9 NC_004812.1 + 83285 0.7 0.508136
Target:  5'- cGAGCGCGgCgcuggCCGCGcuguGGUCGUGCa- -3'
miRNA:   3'- -UUCGCGCgGa----GGCGUu---UCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 43870 0.69 0.557793
Target:  5'- cGGCgGCGCCgCCGCGcGGuUCGCGCc- -3'
miRNA:   3'- uUCG-CGCGGaGGCGUuUC-AGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 102832 0.69 0.557793
Target:  5'- cGGCGCGCCUCCaCGccGgcgaCGCGCa- -3'
miRNA:   3'- uUCGCGCGGAGGcGUuuCa---GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 138245 0.66 0.719889
Target:  5'- -cGCGgGCCcgcguacgCCGCGGcggccgcGGUCGCGCg- -3'
miRNA:   3'- uuCGCgCGGa-------GGCGUU-------UCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 928 0.66 0.710892
Target:  5'- -cGCGCGCCgagcCCGCcg---CGCGCUc -3'
miRNA:   3'- uuCGCGCGGa---GGCGuuucaGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 59488 0.68 0.619001
Target:  5'- gAGGCGCGCCgCCGCGgcGgCGCGg-- -3'
miRNA:   3'- -UUCGCGCGGaGGCGUuuCaGCGCgaa -5'
21582 5' -58.9 NC_004812.1 + 95411 0.68 0.619001
Target:  5'- -cGCGCGCC-CgGCGAGuGaCGCGCUg -3'
miRNA:   3'- uuCGCGCGGaGgCGUUU-CaGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 41203 0.68 0.639563
Target:  5'- cGGCGCGCCg-CGCGGGGcggcgacuaCGCGCUg -3'
miRNA:   3'- uUCGCGCGGagGCGUUUCa--------GCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 83733 0.67 0.657024
Target:  5'- -cGCGUGCCUggcggcgcagcugcCCGCGcuGUCcGCGCUg -3'
miRNA:   3'- uuCGCGCGGA--------------GGCGUuuCAG-CGCGAa -5'
21582 5' -58.9 NC_004812.1 + 94341 0.67 0.670339
Target:  5'- cGGCGCgGCCUgCGCGGGG-CGgGCg- -3'
miRNA:   3'- uUCGCG-CGGAgGCGUUUCaGCgCGaa -5'
21582 5' -58.9 NC_004812.1 + 35885 0.67 0.686653
Target:  5'- -uGCGCGCCggggggccgugcgCCGCAGGG-CGgGCg- -3'
miRNA:   3'- uuCGCGCGGa------------GGCGUUUCaGCgCGaa -5'
21582 5' -58.9 NC_004812.1 + 39497 0.67 0.700833
Target:  5'- uGGCGCGCCgcCCG-GAGGcCGCGCc- -3'
miRNA:   3'- uUCGCGCGGa-GGCgUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 1499 0.67 0.700833
Target:  5'- gGAGCGCcgGCCggcCCGCGccGcCGCGCg- -3'
miRNA:   3'- -UUCGCG--CGGa--GGCGUuuCaGCGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.