miRNA display CGI


Results 81 - 100 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21582 5' -58.9 NC_004812.1 + 140456 0.67 0.6601
Target:  5'- cGGGCGCGCCggaGCucgaugucccGGUCGCGCa- -3'
miRNA:   3'- -UUCGCGCGGaggCGuu--------UCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 31182 0.67 0.680547
Target:  5'- -cGCGCGCgCUCCGCcgccguccGGcCGCGCc- -3'
miRNA:   3'- uuCGCGCG-GAGGCGuu------UCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 43695 0.67 0.690714
Target:  5'- -cGCGCuGCCUUCGCGgcGAGg-GCGCUc -3'
miRNA:   3'- uuCGCG-CGGAGGCGU--UUCagCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 39497 0.67 0.700833
Target:  5'- uGGCGCGCCgcCCG-GAGGcCGCGCc- -3'
miRNA:   3'- uUCGCGCGGa-GGCgUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 63008 0.69 0.578059
Target:  5'- gAAGCGCggGCCgCCGCGuccgcGAGcgCGCGCUUg -3'
miRNA:   3'- -UUCGCG--CGGaGGCGU-----UUCa-GCGCGAA- -5'
21582 5' -58.9 NC_004812.1 + 148012 0.7 0.508136
Target:  5'- gAGGCGCgGCCUCCGgGcGG-CGCGCc- -3'
miRNA:   3'- -UUCGCG-CGGAGGCgUuUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 132849 0.66 0.759992
Target:  5'- cGAGCGCGCgCggUGCuugguGUCGCGCa- -3'
miRNA:   3'- -UUCGCGCG-GagGCGuuu--CAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 102832 0.69 0.557793
Target:  5'- cGGCGCGCCUCCaCGccGgcgaCGCGCa- -3'
miRNA:   3'- uUCGCGCGGAGGcGUuuCa---GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 196 0.71 0.45119
Target:  5'- -cGCGCGCCgCCGgGggagggcccGGGUCGCGCa- -3'
miRNA:   3'- uuCGCGCGGaGGCgU---------UUCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 91505 0.7 0.469799
Target:  5'- gGGGcCGCGCCagccacuccUCCGCGGGG-CGCGCg- -3'
miRNA:   3'- -UUC-GCGCGG---------AGGCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 43870 0.69 0.557793
Target:  5'- cGGCgGCGCCgCCGCGcGGuUCGCGCc- -3'
miRNA:   3'- uUCG-CGCGGaGGCGUuUC-AGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 94225 0.7 0.488792
Target:  5'- gGGGCGCGCUUCagGCGAccGUCGUGCa- -3'
miRNA:   3'- -UUCGCGCGGAGg-CGUUu-CAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 26971 0.69 0.537734
Target:  5'- aGGGgGCGCC-CCGCGAAcucggCGCGCUc -3'
miRNA:   3'- -UUCgCGCGGaGGCGUUUca---GCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 112912 0.69 0.537734
Target:  5'- gGAGCGC-CCUcgCCGCGAAGgcaGCGCg- -3'
miRNA:   3'- -UUCGCGcGGA--GGCGUUUCag-CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 6360 0.67 0.680547
Target:  5'- cAGGCGCGCCgcCCGCcAGGgacgCGgGCa- -3'
miRNA:   3'- -UUCGCGCGGa-GGCGuUUCa---GCgCGaa -5'
21582 5' -58.9 NC_004812.1 + 148964 0.67 0.6601
Target:  5'- aGAGCGgGUCgUCgGCGAGG-CGCGCg- -3'
miRNA:   3'- -UUCGCgCGG-AGgCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 136504 0.67 0.670339
Target:  5'- -cGCGCGCCgCUGCGcgcGG-CGCGCUc -3'
miRNA:   3'- uuCGCGCGGaGGCGUu--UCaGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 60839 0.67 0.670339
Target:  5'- cGGGCGCGCU--CGCAGAGgCGCGUc- -3'
miRNA:   3'- -UUCGCGCGGagGCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 31182 0.67 0.680547
Target:  5'- uGGGCGgucCGUCgUCCGCAGGGUCGUcccGCUg -3'
miRNA:   3'- -UUCGC---GCGG-AGGCGUUUCAGCG---CGAa -5'
21582 5' -58.9 NC_004812.1 + 125705 0.71 0.45119
Target:  5'- -cGCGCGCCgCCGgGggagggcccGGGUCGCGCa- -3'
miRNA:   3'- uuCGCGCGGaGGCgU---------UUCAGCGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.