miRNA display CGI


Results 101 - 120 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21582 5' -58.9 NC_004812.1 + 281 0.67 0.680547
Target:  5'- -cGCGCGCgCUCCGCcgccguccGGcCGCGCc- -3'
miRNA:   3'- uuCGCGCG-GAGGCGuu------UCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 148964 0.67 0.6601
Target:  5'- aGAGCGgGUCgUCgGCGAGG-CGCGCg- -3'
miRNA:   3'- -UUCGCgCGG-AGgCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 60839 0.67 0.670339
Target:  5'- cGGGCGCGCU--CGCAGAGgCGCGUc- -3'
miRNA:   3'- -UUCGCGCGGagGCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 136504 0.67 0.670339
Target:  5'- -cGCGCGCCgCUGCGcgcGG-CGCGCUc -3'
miRNA:   3'- uuCGCGCGGaGGCGUu--UCaGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 141600 0.67 0.649839
Target:  5'- uGGGCGCcuGCCccgUCCGCAAccuGcCGCGCUg -3'
miRNA:   3'- -UUCGCG--CGG---AGGCGUUu--CaGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 34982 0.67 0.649839
Target:  5'- gAGGCGCGCC-CCGUuguAGUagacCGCGUUg -3'
miRNA:   3'- -UUCGCGCGGaGGCGuu-UCA----GCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 443 0.68 0.629281
Target:  5'- -cGCGCGCCcgCCGCGAgcccgggccgccGG-CGCGCc- -3'
miRNA:   3'- uuCGCGCGGa-GGCGUU------------UCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 31182 0.67 0.680547
Target:  5'- uGGGCGgucCGUCgUCCGCAGGGUCGUcccGCUg -3'
miRNA:   3'- -UUCGC---GCGG-AGGCGUUUCAGCG---CGAa -5'
21582 5' -58.9 NC_004812.1 + 112912 0.69 0.537734
Target:  5'- gGAGCGC-CCUcgCCGCGAAGgcaGCGCg- -3'
miRNA:   3'- -UUCGCGcGGA--GGCGUUUCag-CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 26971 0.69 0.537734
Target:  5'- aGGGgGCGCC-CCGCGAAcucggCGCGCUc -3'
miRNA:   3'- -UUCgCGCGGaGGCGUUUca---GCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 65095 0.69 0.526807
Target:  5'- -cGCGCGCC-CCGCGGAGgaguggcUgGCGCg- -3'
miRNA:   3'- uuCGCGCGGaGGCGUUUC-------AgCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 20299 0.7 0.51793
Target:  5'- cGGCGCGCCggCGCAgcG-CGCGCg- -3'
miRNA:   3'- uUCGCGCGGagGCGUuuCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 67387 0.7 0.51793
Target:  5'- -cGCGgGCCUCCGCc--GcCGCGCg- -3'
miRNA:   3'- uuCGCgCGGAGGCGuuuCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 68193 0.7 0.508136
Target:  5'- gGGGCGCGCCggaCGCccGGcCGCGCg- -3'
miRNA:   3'- -UUCGCGCGGag-GCGuuUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 117111 0.7 0.508136
Target:  5'- gAGGCGCgGCCUCCGgGcGG-CGCGCc- -3'
miRNA:   3'- -UUCGCG-CGGAGGCgUuUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 79357 0.7 0.508136
Target:  5'- cAGCgGCGCCcCCGCGAGGgcaGCGCc- -3'
miRNA:   3'- uUCG-CGCGGaGGCGUUUCag-CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 129107 0.68 0.608732
Target:  5'- cGGGCGCGCCg--GCGAGGagcucUUGCGCUUg -3'
miRNA:   3'- -UUCGCGCGGaggCGUUUC-----AGCGCGAA- -5'
21582 5' -58.9 NC_004812.1 + 134835 0.68 0.619001
Target:  5'- uGGCGCGCC-CCGgGGGGUgGCGa-- -3'
miRNA:   3'- uUCGCGCGGaGGCgUUUCAgCGCgaa -5'
21582 5' -58.9 NC_004812.1 + 152681 0.68 0.619001
Target:  5'- -cGCGCGCCgugCCGCGc---CGCGCg- -3'
miRNA:   3'- uuCGCGCGGa--GGCGUuucaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 154866 0.68 0.619001
Target:  5'- gGGGCGCGggcUCgggCCGCGGAGgCGCGCg- -3'
miRNA:   3'- -UUCGCGC---GGa--GGCGUUUCaGCGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.