miRNA display CGI


Results 41 - 60 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 141208 0.66 0.577919
Target:  5'- -cGUUCCGGCggGCGGGgGCgaguacGUGCCGGu -3'
miRNA:   3'- cuCAGGGUCG--CGUCCgCGa-----CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 107132 0.66 0.548675
Target:  5'- cGAGcUCCAGCGCcgucAGGCGaaccaGCGCCGc -3'
miRNA:   3'- -CUCaGGGUCGCG----UCCGCga---CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 36371 0.66 0.587748
Target:  5'- uGGG-CgCAGCcgaagacggGCAGGgGCUGgGCCGGg -3'
miRNA:   3'- -CUCaGgGUCG---------CGUCCgCGACgCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 155899 0.66 0.587748
Target:  5'- cGGGg-CCGGCGCccGGGCuGCcGCGCCGa -3'
miRNA:   3'- -CUCagGGUCGCG--UCCG-CGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 28408 0.66 0.60749
Target:  5'- --uUCCCGGUacaccucggcccGCAGGUGCgucucCGCCAGg -3'
miRNA:   3'- cucAGGGUCG------------CGUCCGCGac---GCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 82672 0.66 0.59662
Target:  5'- -cGUCUggugCAGCagggcgaGCAGGCGCcgcuggGCGCCGGc -3'
miRNA:   3'- cuCAGG----GUCG-------CGUCCGCGa-----CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 69837 0.66 0.587748
Target:  5'- cGGUCgCCcucGCGCccgcgucGCGCUGCGCCAu -3'
miRNA:   3'- cUCAG-GGu--CGCGuc-----CGCGACGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 110505 0.66 0.548675
Target:  5'- cGAGgggCUgGcGUGCGGGCGcCUGCuGCCGGu -3'
miRNA:   3'- -CUCa--GGgU-CGCGUCCGC-GACG-CGGUC- -5'
21585 3' -62.7 NC_004812.1 + 117379 0.66 0.577919
Target:  5'- ---gCCCGGCaGCGcGGCgGCgGCGCCGGc -3'
miRNA:   3'- cucaGGGUCG-CGU-CCG-CGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 152992 0.66 0.60749
Target:  5'- uGAG-CgCCGGgGCGGGC-CUGgGUCAGg -3'
miRNA:   3'- -CUCaG-GGUCgCGUCCGcGACgCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 1998 0.66 0.558377
Target:  5'- cGGGUCCCgccggcGGuCGCucgGGGCGCcGaCGCCGGc -3'
miRNA:   3'- -CUCAGGG------UC-GCG---UCCGCGaC-GCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 155593 0.66 0.60749
Target:  5'- cGGGcCCUcGCGgGGGCGCgGCcccgGCCGGg -3'
miRNA:   3'- -CUCaGGGuCGCgUCCGCGaCG----CGGUC- -5'
21585 3' -62.7 NC_004812.1 + 106748 0.66 0.545774
Target:  5'- -cGUCCgGGCGCgggggggucggaggAGGgGCgGCGUCGGg -3'
miRNA:   3'- cuCAGGgUCGCG--------------UCCgCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 36020 0.66 0.547707
Target:  5'- gGGGUCCgGgGgGCGGGCGCggagGCgggagggccgcggGCCAGa -3'
miRNA:   3'- -CUCAGGgU-CgCGUCCGCGa---CG-------------CGGUC- -5'
21585 3' -62.7 NC_004812.1 + 55255 0.66 0.586764
Target:  5'- uAGUa-CAGCGCgguguugGGGgGCUGgGCCAGg -3'
miRNA:   3'- cUCAggGUCGCG-------UCCgCGACgCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 121906 0.66 0.594646
Target:  5'- cAGgCCgGGCGCGGGC-CUgaggucgggccugaGCGCCGGg -3'
miRNA:   3'- cUCaGGgUCGCGUCCGcGA--------------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 43760 0.66 0.598594
Target:  5'- uGAG-CCCAGCGCgugagcgccgAGGCcacgcccugcgucuuCUGCGCCAu -3'
miRNA:   3'- -CUCaGGGUCGCG----------UCCGc--------------GACGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 37618 0.66 0.601557
Target:  5'- cAGUCCCGGUGCGcguccagcugcucgcGGCGCaUGagGCCGu -3'
miRNA:   3'- cUCAGGGUCGCGU---------------CCGCG-ACg-CGGUc -5'
21585 3' -62.7 NC_004812.1 + 713 0.66 0.60749
Target:  5'- -cGUCggcgUCGGCGCcGGCGCgGuCGCCGGc -3'
miRNA:   3'- cuCAG----GGUCGCGuCCGCGaC-GCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 99899 0.66 0.577919
Target:  5'- cGAGUCCCucgGGCGUGGGCaggagGCaGcCGCCGa -3'
miRNA:   3'- -CUCAGGG---UCGCGUCCG-----CGaC-GCGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.