miRNA display CGI


Results 81 - 100 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 155899 0.66 0.587748
Target:  5'- cGGGg-CCGGCGCccGGGCuGCcGCGCCGa -3'
miRNA:   3'- -CUCagGGUCGCG--UCCG-CGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 30949 0.67 0.501062
Target:  5'- cGGGcCgCgGGCGCGgcGGCGCgGCGCCAc -3'
miRNA:   3'- -CUCaG-GgUCGCGU--CCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 73437 0.67 0.539025
Target:  5'- cGAGcUCCGGgGCcGcGCGCcacgGCGCCAGg -3'
miRNA:   3'- -CUCaGGGUCgCGuC-CGCGa---CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 118791 0.67 0.539025
Target:  5'- ---cCCCGGCcccGCGGGCGCagcGCGCCc- -3'
miRNA:   3'- cucaGGGUCG---CGUCCGCGa--CGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 100784 0.67 0.501062
Target:  5'- cGAG-CagAGCGacgagAGGCGCUGCGCCGc -3'
miRNA:   3'- -CUCaGggUCGCg----UCCGCGACGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 23493 0.67 0.501062
Target:  5'- aGGGUgUgCGGCGggcCGGGCGCggcgGCGCCGGc -3'
miRNA:   3'- -CUCA-GgGUCGC---GUCCGCGa---CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 1292 0.67 0.501062
Target:  5'- aGGGUCCC--CGgAGGCGggGCGCCGa -3'
miRNA:   3'- -CUCAGGGucGCgUCCGCgaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 23400 0.67 0.491752
Target:  5'- cGAGcgUCCGGCGaCGGGCGUccggcgGCGUCGGc -3'
miRNA:   3'- -CUCa-GGGUCGC-GUCCGCGa-----CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 149693 0.67 0.501062
Target:  5'- ---cCCCGGCccGCGGGCGCagcGCGCCc- -3'
miRNA:   3'- cucaGGGUCG--CGUCCGCGa--CGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 130807 0.67 0.510448
Target:  5'- gGAGagCCAGCuGUGGGCccuGCUGCGgCGGg -3'
miRNA:   3'- -CUCagGGUCG-CGUCCG---CGACGCgGUC- -5'
21585 3' -62.7 NC_004812.1 + 126800 0.67 0.501062
Target:  5'- aGGGUCCC--CGgAGGCGggGCGCCGa -3'
miRNA:   3'- -CUCAGGGucGCgUCCGCgaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 35861 0.67 0.501062
Target:  5'- gGGGUCgCUGGCGCAGGCGggGgGgUAGg -3'
miRNA:   3'- -CUCAG-GGUCGCGUCCGCgaCgCgGUC- -5'
21585 3' -62.7 NC_004812.1 + 3240 0.67 0.500127
Target:  5'- ---aCCCGGCGCccgccagGGGCGCccGCGCCc- -3'
miRNA:   3'- cucaGGGUCGCG-------UCCGCGa-CGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 7957 0.67 0.495467
Target:  5'- -cGUCCgGggggggccgagagacGCGgAGGCGCgcggGCGCCGGu -3'
miRNA:   3'- cuCAGGgU---------------CGCgUCCGCGa---CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 43487 0.67 0.491752
Target:  5'- aGGUCgCGGCGCGucucGGUGC-GCGUCAGc -3'
miRNA:   3'- cUCAGgGUCGCGU----CCGCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 148908 0.67 0.491752
Target:  5'- cGAGcgUCCGGCGaCGGGCGUccggcgGCGUCGGc -3'
miRNA:   3'- -CUCa-GGGUCGC-GUCCGCGa-----CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 113748 0.67 0.491752
Target:  5'- -cGUCCUcgugacgcuGGCGCGccugccgacGGCGCcaaGCGCCAGa -3'
miRNA:   3'- cuCAGGG---------UCGCGU---------CCGCGa--CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 96260 0.67 0.491752
Target:  5'- -cGUCCgaGGCGCGGGCGggccugGCGCCc- -3'
miRNA:   3'- cuCAGGg-UCGCGUCCGCga----CGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 153067 0.67 0.510448
Target:  5'- cGGGcCUgGGCGCGGGC-CUGgGCCuGg -3'
miRNA:   3'- -CUCaGGgUCGCGUCCGcGACgCGGuC- -5'
21585 3' -62.7 NC_004812.1 + 19530 0.67 0.510448
Target:  5'- cGAG-CCCGGCGUcaGGGCGCgGUGgaucgcgaagcCCAGg -3'
miRNA:   3'- -CUCaGGGUCGCG--UCCGCGaCGC-----------GGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.