miRNA display CGI


Results 101 - 120 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 22296 0.67 0.539025
Target:  5'- aGGGUgaCCCucuGGCGgGGGgGCcucgGCGCCGGg -3'
miRNA:   3'- -CUCA--GGG---UCGCgUCCgCGa---CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 141238 0.67 0.536142
Target:  5'- aGGUCCCuggggagggcguGGuCGCuaaggaacgccuccAGGCGCUGCGUCAc -3'
miRNA:   3'- cUCAGGG------------UC-GCG--------------UCCGCGACGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 97768 0.67 0.535182
Target:  5'- uGGUCuuugCCGGCGCcGGCGCcaacgccucggagGCGCCAa -3'
miRNA:   3'- cUCAG----GGUCGCGuCCGCGa------------CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 83282 0.67 0.529435
Target:  5'- --uUCCgAGCGC-GGCGCUG-GCCGc -3'
miRNA:   3'- cucAGGgUCGCGuCCGCGACgCGGUc -5'
21585 3' -62.7 NC_004812.1 + 100823 0.67 0.519908
Target:  5'- -cGUCUCgGGgGCGGGCGCcGCgacGCCGGg -3'
miRNA:   3'- cuCAGGG-UCgCGUCCGCGaCG---CGGUC- -5'
21585 3' -62.7 NC_004812.1 + 3287 0.67 0.517062
Target:  5'- cGAGg-CCAGCGCGcgcgggucgaaggcGaGCGCggcGCGCCAGg -3'
miRNA:   3'- -CUCagGGUCGCGU--------------C-CGCGa--CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 119105 0.67 0.510448
Target:  5'- --cUCCaCAacaCGCAGGCGC-GCGCCGGc -3'
miRNA:   3'- cucAGG-GUc--GCGUCCGCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 154656 0.67 0.529435
Target:  5'- ---cCCCGGCGCccGGCGC-GCGCgCGGc -3'
miRNA:   3'- cucaGGGUCGCGu-CCGCGaCGCG-GUC- -5'
21585 3' -62.7 NC_004812.1 + 108853 0.67 0.529435
Target:  5'- ---cCCCAGCGCcgcGGCGCUGaccucguuCGCCGc -3'
miRNA:   3'- cucaGGGUCGCGu--CCGCGAC--------GCGGUc -5'
21585 3' -62.7 NC_004812.1 + 97210 0.67 0.529435
Target:  5'- --aUCCUGGCGguGccacGCGCUGCGUgGGg -3'
miRNA:   3'- cucAGGGUCGCguC----CGCGACGCGgUC- -5'
21585 3' -62.7 NC_004812.1 + 67762 0.67 0.529435
Target:  5'- cGGUCCCGGgGgAGGCGgCgGC-CCGGg -3'
miRNA:   3'- cUCAGGGUCgCgUCCGC-GaCGcGGUC- -5'
21585 3' -62.7 NC_004812.1 + 73775 0.67 0.523711
Target:  5'- cGGGUgCCCgcgggcuccgcgagcGGgGCGGGCGCcgGCGCCc- -3'
miRNA:   3'- -CUCA-GGG---------------UCgCGUCCGCGa-CGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 129401 0.67 0.519908
Target:  5'- cAG-CCagaGGCGCGGGCGCggcgGCGCg-- -3'
miRNA:   3'- cUCaGGg--UCGCGUCCGCGa---CGCGguc -5'
21585 3' -62.7 NC_004812.1 + 108745 0.67 0.519908
Target:  5'- ----aCCuGCuGCAGGCGCUGCgGCUGGg -3'
miRNA:   3'- cucagGGuCG-CGUCCGCGACG-CGGUC- -5'
21585 3' -62.7 NC_004812.1 + 29147 0.67 0.529435
Target:  5'- ---cCCCGGCGCccGGCGC-GCGCgCGGc -3'
miRNA:   3'- cucaGGGUCGCGu-CCGCGaCGCG-GUC- -5'
21585 3' -62.7 NC_004812.1 + 100784 0.67 0.501062
Target:  5'- cGAG-CagAGCGacgagAGGCGCUGCGCCGc -3'
miRNA:   3'- -CUCaGggUCGCg----UCCGCGACGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 130807 0.67 0.510448
Target:  5'- gGAGagCCAGCuGUGGGCccuGCUGCGgCGGg -3'
miRNA:   3'- -CUCagGGUCG-CGUCCG---CGACGCgGUC- -5'
21585 3' -62.7 NC_004812.1 + 19530 0.67 0.510448
Target:  5'- cGAG-CCCGGCGUcaGGGCGCgGUGgaucgcgaagcCCAGg -3'
miRNA:   3'- -CUCaGGGUCGCG--UCCGCGaCGC-----------GGUC- -5'
21585 3' -62.7 NC_004812.1 + 149693 0.67 0.501062
Target:  5'- ---cCCCGGCccGCGGGCGCagcGCGCCc- -3'
miRNA:   3'- cucaGGGUCG--CGUCCGCGa--CGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 153067 0.67 0.510448
Target:  5'- cGGGcCUgGGCGCGGGC-CUGgGCCuGg -3'
miRNA:   3'- -CUCaGGgUCGCGUCCGcGACgCGGuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.