miRNA display CGI


Results 121 - 140 of 262 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 58833 0.67 0.519908
Target:  5'- --cUCCgaGGCGUuGGCGCcgGCGCCGGc -3'
miRNA:   3'- cucAGGg-UCGCGuCCGCGa-CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 94262 0.67 0.519908
Target:  5'- ---aCCCAcGCGCcgcGGGCGC-GCGCCGc -3'
miRNA:   3'- cucaGGGU-CGCG---UCCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 108745 0.67 0.519908
Target:  5'- ----aCCuGCuGCAGGCGCUGCgGCUGGg -3'
miRNA:   3'- cucagGGuCG-CGUCCGCGACG-CGGUC- -5'
21585 3' -62.7 NC_004812.1 + 129401 0.67 0.519908
Target:  5'- cAG-CCagaGGCGCGGGCGCggcgGCGCg-- -3'
miRNA:   3'- cUCaGGg--UCGCGUCCGCGa---CGCGguc -5'
21585 3' -62.7 NC_004812.1 + 73775 0.67 0.523711
Target:  5'- cGGGUgCCCgcgggcuccgcgagcGGgGCGGGCGCcgGCGCCc- -3'
miRNA:   3'- -CUCA-GGG---------------UCgCGUCCGCGa-CGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 67762 0.67 0.529435
Target:  5'- cGGUCCCGGgGgAGGCGgCgGC-CCGGg -3'
miRNA:   3'- cUCAGGGUCgCgUCCGC-GaCGcGGUC- -5'
21585 3' -62.7 NC_004812.1 + 97210 0.67 0.529435
Target:  5'- --aUCCUGGCGguGccacGCGCUGCGUgGGg -3'
miRNA:   3'- cucAGGGUCGCguC----CGCGACGCGgUC- -5'
21585 3' -62.7 NC_004812.1 + 128795 0.67 0.517062
Target:  5'- cGAGg-CCAGCGCGcgcgggucgaaggcGaGCGCggcGCGCCAGg -3'
miRNA:   3'- -CUCagGGUCGCGU--------------C-CGCGa--CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 122166 0.67 0.510448
Target:  5'- cGGGcCUgGGCGCGGGC-CUGgGCCuGg -3'
miRNA:   3'- -CUCaGGgUCGCGUCCGcGACgCGGuC- -5'
21585 3' -62.7 NC_004812.1 + 7957 0.67 0.495467
Target:  5'- -cGUCCgGggggggccgagagacGCGgAGGCGCgcggGCGCCGGu -3'
miRNA:   3'- cuCAGGgU---------------CGCgUCCGCGa---CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 3240 0.67 0.500127
Target:  5'- ---aCCCGGCGCccgccagGGGCGCccGCGCCc- -3'
miRNA:   3'- cucaGGGUCGCG-------UCCGCGa-CGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 35861 0.67 0.501062
Target:  5'- gGGGUCgCUGGCGCAGGCGggGgGgUAGg -3'
miRNA:   3'- -CUCAG-GGUCGCGUCCGCgaCgCgGUC- -5'
21585 3' -62.7 NC_004812.1 + 126800 0.67 0.501062
Target:  5'- aGGGUCCC--CGgAGGCGggGCGCCGa -3'
miRNA:   3'- -CUCAGGGucGCgUCCGCgaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 121731 0.67 0.501062
Target:  5'- aGGUgCCCGG-GCcGGCGCgcggcgggggGCGCCGGg -3'
miRNA:   3'- cUCA-GGGUCgCGuCCGCGa---------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 149001 0.67 0.501062
Target:  5'- aGGGUgUgCGGCGggcCGGGCGCggcgGCGCCGGc -3'
miRNA:   3'- -CUCA-GgGUCGC---GUCCGCGa---CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 48 0.67 0.501062
Target:  5'- cGGGcCgCgGGCGCGgcGGCGCgGCGCCAc -3'
miRNA:   3'- -CUCaG-GgUCGCGU--CCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 136378 0.67 0.501062
Target:  5'- aGGUCCCGGCGgccGCGCUagccguugcggGCGCCAc -3'
miRNA:   3'- cUCAGGGUCGCgucCGCGA-----------CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 156458 0.67 0.501062
Target:  5'- cGGGcCgCgGGCGCGgcGGCGCgGCGCCAc -3'
miRNA:   3'- -CUCaG-GgUCGCGU--CCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 56905 0.67 0.510448
Target:  5'- cAG-CCCugGGCGCAGGCGCcGcCGCaCGGc -3'
miRNA:   3'- cUCaGGG--UCGCGUCCGCGaC-GCG-GUC- -5'
21585 3' -62.7 NC_004812.1 + 71111 0.67 0.510448
Target:  5'- cGGUUUCGGuCGgAGGCGCggGCGCCu- -3'
miRNA:   3'- cUCAGGGUC-GCgUCCGCGa-CGCGGuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.