miRNA display CGI


Results 61 - 80 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 21158 0.69 0.417914
Target:  5'- gGGGUCUCGGCGUgccgcgggacgccgAGGCGC-GCGUCGu -3'
miRNA:   3'- -CUCAGGGUCGCG--------------UCCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 82831 0.69 0.395383
Target:  5'- -cGUCUCAGCGUacccggGGGUGCgcGCGCCGa -3'
miRNA:   3'- cuCAGGGUCGCG------UCCGCGa-CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 54542 0.69 0.411998
Target:  5'- uGGUgCCCGGCGCGcccGGCGCgGCcCCGGc -3'
miRNA:   3'- cUCA-GGGUCGCGU---CCGCGaCGcGGUC- -5'
21585 3' -62.7 NC_004812.1 + 127936 0.69 0.411998
Target:  5'- ---cCCCAgcgcGCGCAGGCGCggugcgagUGCGCCu- -3'
miRNA:   3'- cucaGGGU----CGCGUCCGCG--------ACGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 16161 0.69 0.429038
Target:  5'- cGAGcUCCGGCGCgcccgacuggGGGCGCUcgauCGCCAGc -3'
miRNA:   3'- -CUCaGGGUCGCG----------UCCGCGAc---GCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 44321 0.69 0.429038
Target:  5'- cGAGcucggCCCGG-GCGGGCGCgGC-CCAGa -3'
miRNA:   3'- -CUCa----GGGUCgCGUCCGCGaCGcGGUC- -5'
21585 3' -62.7 NC_004812.1 + 29238 0.69 0.387239
Target:  5'- gGGGUCgCGGaggaGCGGGCcgggGCUGCGCgGGg -3'
miRNA:   3'- -CUCAGgGUCg---CGUCCG----CGACGCGgUC- -5'
21585 3' -62.7 NC_004812.1 + 27344 0.69 0.388049
Target:  5'- -cGUCgCCGGCGCcgccgcgccgcugcuGGCGCgcggcccGCGCCAGg -3'
miRNA:   3'- cuCAG-GGUCGCGu--------------CCGCGa------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 135819 0.69 0.395383
Target:  5'- cGG-CCUGGCGCAGcGC-CUGCGCUGGg -3'
miRNA:   3'- cUCaGGGUCGCGUC-CGcGACGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 80267 0.69 0.395383
Target:  5'- cGGaCCUGGCGguGGCGgUGCGgCGGg -3'
miRNA:   3'- cUCaGGGUCGCguCCGCgACGCgGUC- -5'
21585 3' -62.7 NC_004812.1 + 1479 0.69 0.395383
Target:  5'- -cGUCCuCGGCGgGcggcGGCGgaGCGCCGGc -3'
miRNA:   3'- cuCAGG-GUCGCgU----CCGCgaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 130711 0.69 0.395383
Target:  5'- -cGcCCgCGGCGCuGGGCGCggGCGCCGc -3'
miRNA:   3'- cuCaGG-GUCGCG-UCCGCGa-CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 37809 0.69 0.411998
Target:  5'- uGGUCUCGGgGC--GCGCUGCGCCc- -3'
miRNA:   3'- cUCAGGGUCgCGucCGCGACGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 32413 0.69 0.395383
Target:  5'- cGGUCgCCGcCGCGGGCGCggccGCGCcCAGc -3'
miRNA:   3'- cUCAG-GGUcGCGUCCGCGa---CGCG-GUC- -5'
21585 3' -62.7 NC_004812.1 + 100367 0.69 0.395383
Target:  5'- cGGUUCCGGCGCccgccgccgggGGGCGCgagGCcaccgGCCGGa -3'
miRNA:   3'- cUCAGGGUCGCG-----------UCCGCGa--CG-----CGGUC- -5'
21585 3' -62.7 NC_004812.1 + 126987 0.69 0.395383
Target:  5'- -cGUCCuCGGCGgGcggcGGCGgaGCGCCGGc -3'
miRNA:   3'- cuCAGG-GUCGCgU----CCGCgaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 2428 0.69 0.411998
Target:  5'- ---cCCCAgcgcGCGCAGGCGCggugcgagUGCGCCu- -3'
miRNA:   3'- cucaGGGU----CGCGUCCGCG--------ACGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 18718 0.69 0.411998
Target:  5'- uAGcUCCgCGGCGCugGGGCGCcgcGCGCCAu -3'
miRNA:   3'- cUC-AGG-GUCGCG--UCCGCGa--CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 105654 0.69 0.411157
Target:  5'- gGGGUacacCCCGGCGUgguggugGGGCGCguaCGCCGGg -3'
miRNA:   3'- -CUCA----GGGUCGCG-------UCCGCGac-GCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 37663 0.69 0.411998
Target:  5'- cAGUCCCacaccAGCGgGGGCaGCaGCGCCGc -3'
miRNA:   3'- cUCAGGG-----UCGCgUCCG-CGaCGCGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.