Results 101 - 120 of 262 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21585 | 3' | -62.7 | NC_004812.1 | + | 100907 | 0.68 | 0.464322 |
Target: 5'- cGAG-CgCgGGUGCAGGCGC-GCGCCc- -3' miRNA: 3'- -CUCaG-GgUCGCGUCCGCGaCGCGGuc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 122842 | 0.68 | 0.455357 |
Target: 5'- cGGUgCCGGCGCGcacggcguccucGGCGUcGCGCCGc -3' miRNA: 3'- cUCAgGGUCGCGU------------CCGCGaCGCGGUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 125 | 0.68 | 0.435969 |
Target: 5'- -cGUCCCucgcgagugcgcGCGCGuGGCGCcGCGCCGc -3' miRNA: 3'- cuCAGGGu-----------CGCGU-CCGCGaCGCGGUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 156535 | 0.68 | 0.435969 |
Target: 5'- -cGUCCCucgcgagugcgcGCGCGuGGCGCcGCGCCGc -3' miRNA: 3'- cuCAGGGu-----------CGCGU-CCGCGaCGCGGUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 59666 | 0.68 | 0.446486 |
Target: 5'- cGGg-CCGGCGCGGGCGCcGCGUUg- -3' miRNA: 3'- cUCagGGUCGCGUCCGCGaCGCGGuc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 28138 | 0.68 | 0.455357 |
Target: 5'- -cGUCUCGGCGCuGGGCGCgcaggGCGUg-- -3' miRNA: 3'- cuCAGGGUCGCG-UCCGCGa----CGCGguc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 57826 | 0.68 | 0.455357 |
Target: 5'- gGGGUCCCGuCGCcccacuacgAGGCcucGCUGCGCCu- -3' miRNA: 3'- -CUCAGGGUcGCG---------UCCG---CGACGCGGuc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 135020 | 0.68 | 0.445604 |
Target: 5'- cAGUCCCuggggcgGGUGCGGaCGCUGCGUCuGg -3' miRNA: 3'- cUCAGGG-------UCGCGUCcGCGACGCGGuC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 153743 | 0.68 | 0.455357 |
Target: 5'- cGGUgCCGGCGCGcacggcguccucGGCGUcGCGCCGc -3' miRNA: 3'- cUCAgGGUCGCGU------------CCGCGaCGCGGUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 46643 | 0.68 | 0.473379 |
Target: 5'- cGGGcgCCCggaaacagcAGCGCcacggccgccaGGGCGCcGCGCCGGa -3' miRNA: 3'- -CUCa-GGG---------UCGCG-----------UCCGCGaCGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 124906 | 0.68 | 0.437712 |
Target: 5'- cGAGgCCCuGaCGgAGGC-CUGCGCCGGc -3' miRNA: 3'- -CUCaGGGuC-GCgUCCGcGACGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 99611 | 0.68 | 0.473379 |
Target: 5'- -uGUUCCAGCuggagcuccuCAGGCGCUGCGacccCCGGa -3' miRNA: 3'- cuCAGGGUCGc---------GUCCGCGACGC----GGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 151908 | 0.68 | 0.43684 |
Target: 5'- -cGUCCUcGCGCggcgggccggGGGCGCUccccucgGCGCCGGc -3' miRNA: 3'- cuCAGGGuCGCG----------UCCGCGA-------CGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 138029 | 0.68 | 0.446486 |
Target: 5'- ----gCCGGCGCGGGUGCgGCGgCGGc -3' miRNA: 3'- cucagGGUCGCGUCCGCGaCGCgGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 3240 | 0.67 | 0.500127 |
Target: 5'- ---aCCCGGCGCccgccagGGGCGCccGCGCCc- -3' miRNA: 3'- cucaGGGUCGCG-------UCCGCGa-CGCGGuc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 148908 | 0.67 | 0.491752 |
Target: 5'- cGAGcgUCCGGCGaCGGGCGUccggcgGCGUCGGc -3' miRNA: 3'- -CUCa-GGGUCGC-GUCCGCGa-----CGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 43487 | 0.67 | 0.491752 |
Target: 5'- aGGUCgCGGCGCGucucGGUGC-GCGUCAGc -3' miRNA: 3'- cUCAGgGUCGCGU----CCGCGaCGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 7957 | 0.67 | 0.495467 |
Target: 5'- -cGUCCgGggggggccgagagacGCGgAGGCGCgcggGCGCCGGu -3' miRNA: 3'- cuCAGGgU---------------CGCgUCCGCGa---CGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 35861 | 0.67 | 0.501062 |
Target: 5'- gGGGUCgCUGGCGCAGGCGggGgGgUAGg -3' miRNA: 3'- -CUCAG-GGUCGCGUCCGCgaCgCgGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 126800 | 0.67 | 0.501062 |
Target: 5'- aGGGUCCC--CGgAGGCGggGCGCCGa -3' miRNA: 3'- -CUCAGGGucGCgUCCGCgaCGCGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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