Results 41 - 60 of 262 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21585 | 3' | -62.7 | NC_004812.1 | + | 62469 | 0.7 | 0.333408 |
Target: 5'- ---cCCCAGCGC-GGCGgcCUGCGuCCAGa -3' miRNA: 3'- cucaGGGUCGCGuCCGC--GACGC-GGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 12114 | 0.7 | 0.333408 |
Target: 5'- -cGUgUCCGGCGUcggggggguuggGGGCGCgcgGCGCCGGg -3' miRNA: 3'- cuCA-GGGUCGCG------------UCCGCGa--CGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 21152 | 0.7 | 0.338537 |
Target: 5'- -uGUCgCCGGCGCgcagcucgcggaggAGGCGCUGgGCgCGGa -3' miRNA: 3'- cuCAG-GGUCGCG--------------UCCGCGACgCG-GUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 45170 | 0.7 | 0.340752 |
Target: 5'- gGGGUUCCAGa-CGGGCGCgUGCGUCAc -3' miRNA: 3'- -CUCAGGGUCgcGUCCGCG-ACGCGGUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 97961 | 0.7 | 0.340752 |
Target: 5'- gGGGUCCagGGCGCcgguccugGGGCGgUGgGCCGGg -3' miRNA: 3'- -CUCAGGg-UCGCG--------UCCGCgACgCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 83908 | 0.7 | 0.347461 |
Target: 5'- uGGUCCgAGCGUugucggaAGGCGUUGCuGCCGu -3' miRNA: 3'- cUCAGGgUCGCG-------UCCGCGACG-CGGUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 101318 | 0.7 | 0.347461 |
Target: 5'- cGAG-CCCAccucggcGUGCAGGCGCU-CGCCGc -3' miRNA: 3'- -CUCaGGGU-------CGCGUCCGCGAcGCGGUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 58360 | 0.7 | 0.348213 |
Target: 5'- cGGGUCCCGGCcucCAGG-GCcGCGCCGc -3' miRNA: 3'- -CUCAGGGUCGc--GUCCgCGaCGCGGUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 101933 | 0.7 | 0.348213 |
Target: 5'- gGGGcCCCggacgcgcGGCGCGGGCgGCggGCGUCAGg -3' miRNA: 3'- -CUCaGGG--------UCGCGUCCG-CGa-CGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 46897 | 0.7 | 0.348213 |
Target: 5'- -cGcCCCGGgGCGGGCGCgGCgGCCGc -3' miRNA: 3'- cuCaGGGUCgCGUCCGCGaCG-CGGUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 125980 | 0.7 | 0.355789 |
Target: 5'- cGG-CCCuGaCGgGGGCGCUGUGUCAGg -3' miRNA: 3'- cUCaGGGuC-GCgUCCGCGACGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 56922 | 0.7 | 0.370502 |
Target: 5'- cGAGUCCCuggcggaGGCGgGGGCGUcuagcgGCGCCc- -3' miRNA: 3'- -CUCAGGG-------UCGCgUCCGCGa-----CGCGGuc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 98530 | 0.7 | 0.370502 |
Target: 5'- cGGGUUCguGUGCGcggccucGGCGCcggGCGCCGGg -3' miRNA: 3'- -CUCAGGguCGCGU-------CCGCGa--CGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 57135 | 0.7 | 0.371287 |
Target: 5'- -uGUCUgugGGCGCGGGCGCagGCGCCc- -3' miRNA: 3'- cuCAGGg--UCGCGUCCGCGa-CGCGGuc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 128157 | 0.7 | 0.371287 |
Target: 5'- cGGaCCgGGuCGCGcGGCGCUGCGUCGGc -3' miRNA: 3'- cUCaGGgUC-GCGU-CCGCGACGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 100719 | 0.7 | 0.379207 |
Target: 5'- -cGUCgCCAGCGCGGuGUGCaGCGCgUAGa -3' miRNA: 3'- cuCAG-GGUCGCGUC-CGCGaCGCG-GUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 89295 | 0.7 | 0.382407 |
Target: 5'- gGAGcCCCGGCGUc-GCGCUucgcgcaguucugcgGCGCCGGg -3' miRNA: 3'- -CUCaGGGUCGCGucCGCGA---------------CGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 154746 | 0.69 | 0.387239 |
Target: 5'- gGGGUCgCGGaggaGCGGGCcgggGCUGCGCgGGg -3' miRNA: 3'- -CUCAGgGUCg---CGUCCG----CGACGCGgUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 29238 | 0.69 | 0.387239 |
Target: 5'- gGGGUCgCGGaggaGCGGGCcgggGCUGCGCgGGg -3' miRNA: 3'- -CUCAGgGUCg---CGUCCG----CGACGCGgUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 152852 | 0.69 | 0.388049 |
Target: 5'- -cGUCgCCGGCGCcgccgcgccgcugcuGGCGCgcggcccGCGCCAGg -3' miRNA: 3'- cuCAG-GGUCGCGu--------------CCGCGa------CGCGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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