miRNA display CGI


Results 81 - 100 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 125634 0.68 0.435969
Target:  5'- -cGUCCCucgcgagugcgcGCGCGuGGCGCcGCGCCGc -3'
miRNA:   3'- cuCAGGGu-----------CGCGU-CCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 125 0.68 0.435969
Target:  5'- -cGUCCCucgcgagugcgcGCGCGuGGCGCcGCGCCGc -3'
miRNA:   3'- cuCAGGGu-----------CGCGU-CCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 156535 0.68 0.435969
Target:  5'- -cGUCCCucgcgagugcgcGCGCGuGGCGCcGCGCCGc -3'
miRNA:   3'- cuCAGGGu-----------CGCGU-CCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 121007 0.68 0.43684
Target:  5'- -cGUCCUcGCGCggcgggccggGGGCGCUccccucgGCGCCGGc -3'
miRNA:   3'- cuCAGGGuCGCG----------UCCGCGA-------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 151908 0.68 0.43684
Target:  5'- -cGUCCUcGCGCggcgggccggGGGCGCUccccucgGCGCCGGc -3'
miRNA:   3'- cuCAGGGuCGCG----------UCCGCGA-------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 50465 0.68 0.437712
Target:  5'- cGAG-CUCGGCcucgGCGGGCGCgugugGaCGCCGGg -3'
miRNA:   3'- -CUCaGGGUCG----CGUCCGCGa----C-GCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 122351 0.68 0.437712
Target:  5'- gGGGuUCCCGGCGgGGGcCGggGCGCgGGg -3'
miRNA:   3'- -CUC-AGGGUCGCgUCC-GCgaCGCGgUC- -5'
21585 3' -62.7 NC_004812.1 + 95054 0.68 0.437712
Target:  5'- gGGGUCCCGGCGCGaGCGgCUacGCGaCCGc -3'
miRNA:   3'- -CUCAGGGUCGCGUcCGC-GA--CGC-GGUc -5'
21585 3' -62.7 NC_004812.1 + 153252 0.68 0.437712
Target:  5'- gGGGuUCCCGGCGgGGGcCGggGCGCgGGg -3'
miRNA:   3'- -CUC-AGGGUCGCgUCC-GCgaCGCGgUC- -5'
21585 3' -62.7 NC_004812.1 + 124906 0.68 0.437712
Target:  5'- cGAGgCCCuGaCGgAGGC-CUGCGCCGGc -3'
miRNA:   3'- -CUCaGGGuC-GCgUCCGcGACGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 135020 0.68 0.445604
Target:  5'- cAGUCCCuggggcgGGUGCGGaCGCUGCGUCuGg -3'
miRNA:   3'- cUCAGGG-------UCGCGUCcGCGACGCGGuC- -5'
21585 3' -62.7 NC_004812.1 + 25908 0.68 0.446486
Target:  5'- ---gCCCAGCGCcgcGGGCGC-GCGUCGc -3'
miRNA:   3'- cucaGGGUCGCG---UCCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 138029 0.68 0.446486
Target:  5'- ----gCCGGCGCGGGUGCgGCGgCGGc -3'
miRNA:   3'- cucagGGUCGCGUCCGCGaCGCgGUC- -5'
21585 3' -62.7 NC_004812.1 + 59666 0.68 0.446486
Target:  5'- cGGg-CCGGCGCGGGCGCcGCGUUg- -3'
miRNA:   3'- cUCagGGUCGCGUCCGCGaCGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 57826 0.68 0.455357
Target:  5'- gGGGUCCCGuCGCcccacuacgAGGCcucGCUGCGCCu- -3'
miRNA:   3'- -CUCAGGGUcGCG---------UCCG---CGACGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 153647 0.68 0.455357
Target:  5'- -cGUCUCGGCGCuGGGCGCgcaggGCGUg-- -3'
miRNA:   3'- cuCAGGGUCGCG-UCCGCGa----CGCGguc -5'
21585 3' -62.7 NC_004812.1 + 94343 0.68 0.455357
Target:  5'- uGGGUCUCcGCGCGcGGCGCgGCcCCGGc -3'
miRNA:   3'- -CUCAGGGuCGCGU-CCGCGaCGcGGUC- -5'
21585 3' -62.7 NC_004812.1 + 122842 0.68 0.455357
Target:  5'- cGGUgCCGGCGCGcacggcguccucGGCGUcGCGCCGc -3'
miRNA:   3'- cUCAgGGUCGCGU------------CCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 28138 0.68 0.455357
Target:  5'- -cGUCUCGGCGCuGGGCGCgcaggGCGUg-- -3'
miRNA:   3'- cuCAGGGUCGCG-UCCGCGa----CGCGguc -5'
21585 3' -62.7 NC_004812.1 + 95006 0.68 0.455357
Target:  5'- gGAG-CUCGcucGCGCAGGUGCUGgggcuccacCGCCGGa -3'
miRNA:   3'- -CUCaGGGU---CGCGUCCGCGAC---------GCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.