miRNA display CGI


Results 101 - 120 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 94343 0.68 0.455357
Target:  5'- uGGGUCUCcGCGCGcGGCGCgGCcCCGGc -3'
miRNA:   3'- -CUCAGGGuCGCGU-CCGCGaCGcGGUC- -5'
21585 3' -62.7 NC_004812.1 + 19757 0.68 0.464322
Target:  5'- cAG-CCCGGUGCGGGggucccaggcgaCGC-GCGCCGGg -3'
miRNA:   3'- cUCaGGGUCGCGUCC------------GCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 100907 0.68 0.464322
Target:  5'- cGAG-CgCgGGUGCAGGCGC-GCGCCc- -3'
miRNA:   3'- -CUCaG-GgUCGCGUCCGCGaCGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 130893 0.68 0.464322
Target:  5'- cGAGUCgCGGCGCGGG-GCcggggGCGUCGc -3'
miRNA:   3'- -CUCAGgGUCGCGUCCgCGa----CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 55304 0.68 0.464322
Target:  5'- cGAGgugggCUCGGCGCGGGCcgacGCccggGCGUCGGa -3'
miRNA:   3'- -CUCa----GGGUCGCGUCCG----CGa---CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 144096 0.68 0.464322
Target:  5'- gGAGUCCCcGCuGCcguacguGGUGCUGCGCg-- -3'
miRNA:   3'- -CUCAGGGuCG-CGu------CCGCGACGCGguc -5'
21585 3' -62.7 NC_004812.1 + 5385 0.68 0.464322
Target:  5'- cGAGUCgCGGCGCGGG-GCcggggGCGUCGc -3'
miRNA:   3'- -CUCAGgGUCGCGUCCgCGa----CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 85636 0.68 0.464322
Target:  5'- -cGUUCCGGCcccacGCcucgGGGCGCUgGUGCCGGg -3'
miRNA:   3'- cuCAGGGUCG-----CG----UCCGCGA-CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 30811 0.68 0.464322
Target:  5'- aGGGcCCCacgggGGgGCAGG-GCgGCGCCAGg -3'
miRNA:   3'- -CUCaGGG-----UCgCGUCCgCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 99611 0.68 0.473379
Target:  5'- -uGUUCCAGCuggagcuccuCAGGCGCUGCGacccCCGGa -3'
miRNA:   3'- cuCAGGGUCGc---------GUCCGCGACGC----GGUC- -5'
21585 3' -62.7 NC_004812.1 + 107417 0.68 0.473379
Target:  5'- uGAGcaugCCCAGCuGCAGGCGgUUGU-CCAGg -3'
miRNA:   3'- -CUCa---GGGUCG-CGUCCGC-GACGcGGUC- -5'
21585 3' -62.7 NC_004812.1 + 46643 0.68 0.473379
Target:  5'- cGGGcgCCCggaaacagcAGCGCcacggccgccaGGGCGCcGCGCCGGa -3'
miRNA:   3'- -CUCa-GGG---------UCGCG-----------UCCGCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 68453 0.68 0.482523
Target:  5'- gGGGcUCCCGGUGguGGcCGCgGCGCgCAc -3'
miRNA:   3'- -CUC-AGGGUCGCguCC-GCGaCGCG-GUc -5'
21585 3' -62.7 NC_004812.1 + 77135 0.68 0.482523
Target:  5'- -cGUCCuCGGC-CAGGCGCcGCGUCu- -3'
miRNA:   3'- cuCAGG-GUCGcGUCCGCGaCGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 96260 0.67 0.491752
Target:  5'- -cGUCCgaGGCGCGGGCGggccugGCGCCc- -3'
miRNA:   3'- cuCAGGg-UCGCGUCCGCga----CGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 113748 0.67 0.491752
Target:  5'- -cGUCCUcgugacgcuGGCGCGccugccgacGGCGCcaaGCGCCAGa -3'
miRNA:   3'- cuCAGGG---------UCGCGU---------CCGCGa--CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 148908 0.67 0.491752
Target:  5'- cGAGcgUCCGGCGaCGGGCGUccggcgGCGUCGGc -3'
miRNA:   3'- -CUCa-GGGUCGC-GUCCGCGa-----CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 13494 0.67 0.491752
Target:  5'- -cGUCCguCAGCGcCAGGCGCgGgGCCc- -3'
miRNA:   3'- cuCAGG--GUCGC-GUCCGCGaCgCGGuc -5'
21585 3' -62.7 NC_004812.1 + 11614 0.67 0.491752
Target:  5'- aGGGUCCguagCGGCGCacggccAGGCGCUcCGuCCAGa -3'
miRNA:   3'- -CUCAGG----GUCGCG------UCCGCGAcGC-GGUC- -5'
21585 3' -62.7 NC_004812.1 + 43487 0.67 0.491752
Target:  5'- aGGUCgCGGCGCGucucGGUGC-GCGUCAGc -3'
miRNA:   3'- cUCAGgGUCGCGU----CCGCGaCGCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.