Results 121 - 140 of 262 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21585 | 3' | -62.7 | NC_004812.1 | + | 13494 | 0.67 | 0.491752 |
Target: 5'- -cGUCCguCAGCGcCAGGCGCgGgGCCc- -3' miRNA: 3'- cuCAGG--GUCGC-GUCCGCGaCgCGGuc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 23400 | 0.67 | 0.491752 |
Target: 5'- cGAGcgUCCGGCGaCGGGCGUccggcgGCGUCGGc -3' miRNA: 3'- -CUCa-GGGUCGC-GUCCGCGa-----CGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 11614 | 0.67 | 0.491752 |
Target: 5'- aGGGUCCguagCGGCGCacggccAGGCGCUcCGuCCAGa -3' miRNA: 3'- -CUCAGG----GUCGCG------UCCGCGAcGC-GGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 7957 | 0.67 | 0.495467 |
Target: 5'- -cGUCCgGggggggccgagagacGCGgAGGCGCgcggGCGCCGGu -3' miRNA: 3'- cuCAGGgU---------------CGCgUCCGCGa---CGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 3240 | 0.67 | 0.500127 |
Target: 5'- ---aCCCGGCGCccgccagGGGCGCccGCGCCc- -3' miRNA: 3'- cucaGGGUCGCG-------UCCGCGa-CGCGGuc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 34141 | 0.67 | 0.500127 |
Target: 5'- ---aCCCGGCGCccgccagGGGCGCccGCGCCc- -3' miRNA: 3'- cucaGGGUCGCG-------UCCGCGa-CGCGGuc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 23493 | 0.67 | 0.501062 |
Target: 5'- aGGGUgUgCGGCGggcCGGGCGCggcgGCGCCGGc -3' miRNA: 3'- -CUCA-GgGUCGC---GUCCGCGa---CGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 156458 | 0.67 | 0.501062 |
Target: 5'- cGGGcCgCgGGCGCGgcGGCGCgGCGCCAc -3' miRNA: 3'- -CUCaG-GgUCGCGU--CCGCGaCGCGGUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 100784 | 0.67 | 0.501062 |
Target: 5'- cGAG-CagAGCGacgagAGGCGCUGCGCCGc -3' miRNA: 3'- -CUCaGggUCGCg----UCCGCGACGCGGUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 48 | 0.67 | 0.501062 |
Target: 5'- cGGGcCgCgGGCGCGgcGGCGCgGCGCCAc -3' miRNA: 3'- -CUCaG-GgUCGCGU--CCGCGaCGCGGUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 30949 | 0.67 | 0.501062 |
Target: 5'- cGGGcCgCgGGCGCGgcGGCGCgGCGCCAc -3' miRNA: 3'- -CUCaG-GgUCGCGU--CCGCGaCGCGGUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 136378 | 0.67 | 0.501062 |
Target: 5'- aGGUCCCGGCGgccGCGCUagccguugcggGCGCCAc -3' miRNA: 3'- cUCAGGGUCGCgucCGCGA-----------CGCGGUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 149001 | 0.67 | 0.501062 |
Target: 5'- aGGGUgUgCGGCGggcCGGGCGCggcgGCGCCGGc -3' miRNA: 3'- -CUCA-GgGUCGC---GUCCGCGa---CGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 121731 | 0.67 | 0.501062 |
Target: 5'- aGGUgCCCGG-GCcGGCGCgcggcgggggGCGCCGGg -3' miRNA: 3'- cUCA-GGGUCgCGuCCGCGa---------CGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 57678 | 0.67 | 0.501062 |
Target: 5'- cGGGUCUCuuccgGGCGCcGGcCGCgUGCGCCGc -3' miRNA: 3'- -CUCAGGG-----UCGCGuCC-GCG-ACGCGGUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 1292 | 0.67 | 0.501062 |
Target: 5'- aGGGUCCC--CGgAGGCGggGCGCCGa -3' miRNA: 3'- -CUCAGGGucGCgUCCGCgaCGCGGUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 54682 | 0.67 | 0.501062 |
Target: 5'- cGGGUCgCGGCGaggaGGGCGa-GgGCCAGg -3' miRNA: 3'- -CUCAGgGUCGCg---UCCGCgaCgCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 35861 | 0.67 | 0.501062 |
Target: 5'- gGGGUCgCUGGCGCAGGCGggGgGgUAGg -3' miRNA: 3'- -CUCAG-GGUCGCGUCCGCgaCgCgGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 126800 | 0.67 | 0.501062 |
Target: 5'- aGGGUCCC--CGgAGGCGggGCGCCGa -3' miRNA: 3'- -CUCAGGGucGCgUCCGCgaCGCGGUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 31694 | 0.67 | 0.501062 |
Target: 5'- -cGUCCUcgccGGCGCAGGC-CUcCGUCAGg -3' miRNA: 3'- cuCAGGG----UCGCGUCCGcGAcGCGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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