miRNA display CGI


Results 81 - 100 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 106748 0.66 0.545774
Target:  5'- -cGUCCgGGCGCgggggggucggaggAGGgGCgGCGUCGGg -3'
miRNA:   3'- cuCAGGgUCGCG--------------UCCgCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 4800 0.67 0.539025
Target:  5'- cGAGggCUGGUGCGGGCGCgGgGUCGGc -3'
miRNA:   3'- -CUCagGGUCGCGUCCGCGaCgCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 118791 0.67 0.539025
Target:  5'- ---cCCCGGCcccGCGGGCGCagcGCGCCc- -3'
miRNA:   3'- cucaGGGUCG---CGUCCGCGa--CGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 32463 0.67 0.539025
Target:  5'- aAGUgCCGGCaCAGGCGCgugagGCGCg-- -3'
miRNA:   3'- cUCAgGGUCGcGUCCGCGa----CGCGguc -5'
21585 3' -62.7 NC_004812.1 + 73437 0.67 0.539025
Target:  5'- cGAGcUCCGGgGCcGcGCGCcacgGCGCCAGg -3'
miRNA:   3'- -CUCaGGGUCgCGuC-CGCGa---CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 35701 0.67 0.539025
Target:  5'- cGAGggCUGGUGCGGGCGCgGgGUCGGc -3'
miRNA:   3'- -CUCagGGUCGCGUCCGCGaCgCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 43036 0.67 0.539025
Target:  5'- gGGGUCCUggGGcCGCAGGgGCagguUGUGCUGGa -3'
miRNA:   3'- -CUCAGGG--UC-GCGUCCgCG----ACGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 22296 0.67 0.539025
Target:  5'- aGGGUgaCCCucuGGCGgGGGgGCcucgGCGCCGGg -3'
miRNA:   3'- -CUCA--GGG---UCGCgUCCgCGa---CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 152632 0.67 0.539025
Target:  5'- aGGUgCCCGG-GCcGGCGCgcggcggggggGCGCCGGg -3'
miRNA:   3'- cUCA-GGGUCgCGuCCGCGa----------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 141238 0.67 0.536142
Target:  5'- aGGUCCCuggggagggcguGGuCGCuaaggaacgccuccAGGCGCUGCGUCAc -3'
miRNA:   3'- cUCAGGG------------UC-GCG--------------UCCGCGACGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 97768 0.67 0.535182
Target:  5'- uGGUCuuugCCGGCGCcGGCGCcaacgccucggagGCGCCAa -3'
miRNA:   3'- cUCAG----GGUCGCGuCCGCGa------------CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 74377 0.67 0.533264
Target:  5'- gGGGUCCCgcccgcgcccguuugGGCGCGGGCcuugGCguacGCGCUAu -3'
miRNA:   3'- -CUCAGGG---------------UCGCGUCCG----CGa---CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 74379 0.67 0.529435
Target:  5'- cGAGUCggccgaaCGGCGCuucGGCGC-GgGCCGGg -3'
miRNA:   3'- -CUCAGg------GUCGCGu--CCGCGaCgCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 67762 0.67 0.529435
Target:  5'- cGGUCCCGGgGgAGGCGgCgGC-CCGGg -3'
miRNA:   3'- cUCAGGGUCgCgUCCGC-GaCGcGGUC- -5'
21585 3' -62.7 NC_004812.1 + 154656 0.67 0.529435
Target:  5'- ---cCCCGGCGCccGGCGC-GCGCgCGGc -3'
miRNA:   3'- cucaGGGUCGCGu-CCGCGaCGCG-GUC- -5'
21585 3' -62.7 NC_004812.1 + 108853 0.67 0.529435
Target:  5'- ---cCCCAGCGCcgcGGCGCUGaccucguuCGCCGc -3'
miRNA:   3'- cucaGGGUCGCGu--CCGCGAC--------GCGGUc -5'
21585 3' -62.7 NC_004812.1 + 29147 0.67 0.529435
Target:  5'- ---cCCCGGCGCccGGCGC-GCGCgCGGc -3'
miRNA:   3'- cucaGGGUCGCGu-CCGCGaCGCG-GUC- -5'
21585 3' -62.7 NC_004812.1 + 87730 0.67 0.529435
Target:  5'- gGAGg--CGGCGCGGGCGCcgGgGCCGc -3'
miRNA:   3'- -CUCaggGUCGCGUCCGCGa-CgCGGUc -5'
21585 3' -62.7 NC_004812.1 + 83282 0.67 0.529435
Target:  5'- --uUCCgAGCGC-GGCGCUG-GCCGc -3'
miRNA:   3'- cucAGGgUCGCGuCCGCGACgCGGUc -5'
21585 3' -62.7 NC_004812.1 + 97210 0.67 0.529435
Target:  5'- --aUCCUGGCGguGccacGCGCUGCGUgGGg -3'
miRNA:   3'- cucAGGGUCGCguC----CGCGACGCGgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.