miRNA display CGI


Results 101 - 120 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 73775 0.67 0.523711
Target:  5'- cGGGUgCCCgcgggcuccgcgagcGGgGCGGGCGCcgGCGCCc- -3'
miRNA:   3'- -CUCA-GGG---------------UCgCGUCCGCGa-CGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 3893 0.67 0.519908
Target:  5'- cAG-CCagaGGCGCGGGCGCggcgGCGCg-- -3'
miRNA:   3'- cUCaGGg--UCGCGUCCGCGa---CGCGguc -5'
21585 3' -62.7 NC_004812.1 + 129401 0.67 0.519908
Target:  5'- cAG-CCagaGGCGCGGGCGCggcgGCGCg-- -3'
miRNA:   3'- cUCaGGg--UCGCGUCCGCGa---CGCGguc -5'
21585 3' -62.7 NC_004812.1 + 94262 0.67 0.519908
Target:  5'- ---aCCCAcGCGCcgcGGGCGC-GCGCCGc -3'
miRNA:   3'- cucaGGGU-CGCG---UCCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 58833 0.67 0.519908
Target:  5'- --cUCCgaGGCGUuGGCGCcgGCGCCGGc -3'
miRNA:   3'- cucAGGg-UCGCGuCCGCGa-CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 100823 0.67 0.519908
Target:  5'- -cGUCUCgGGgGCGGGCGCcGCgacGCCGGg -3'
miRNA:   3'- cuCAGGG-UCgCGUCCGCGaCG---CGGUC- -5'
21585 3' -62.7 NC_004812.1 + 110256 0.67 0.519908
Target:  5'- gGAGUCCC--CGC-GGUGCacgUGCGCCAa -3'
miRNA:   3'- -CUCAGGGucGCGuCCGCG---ACGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 56304 0.67 0.519908
Target:  5'- uGGUCCagcacGCGCAGcGCGCgcgcgcGCGCCGc -3'
miRNA:   3'- cUCAGGgu---CGCGUC-CGCGa-----CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 108745 0.67 0.519908
Target:  5'- ----aCCuGCuGCAGGCGCUGCgGCUGGg -3'
miRNA:   3'- cucagGGuCG-CGUCCGCGACG-CGGUC- -5'
21585 3' -62.7 NC_004812.1 + 95483 0.67 0.519908
Target:  5'- uGGUUguUguGCGCGGGCGCcggcGCGCCGc -3'
miRNA:   3'- cUCAG--GguCGCGUCCGCGa---CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 136908 0.67 0.519908
Target:  5'- cGGUCgCCGGCGCcGcGCGCcgccGCGCUGGa -3'
miRNA:   3'- cUCAG-GGUCGCGuC-CGCGa---CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 53849 0.67 0.519908
Target:  5'- cGGUCCgCGGCGUAGGCcgUGUGCuCGGc -3'
miRNA:   3'- cUCAGG-GUCGCGUCCGcgACGCG-GUC- -5'
21585 3' -62.7 NC_004812.1 + 128795 0.67 0.517062
Target:  5'- cGAGg-CCAGCGCGcgcgggucgaaggcGaGCGCggcGCGCCAGg -3'
miRNA:   3'- -CUCagGGUCGCGU--------------C-CGCGa--CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 3287 0.67 0.517062
Target:  5'- cGAGg-CCAGCGCGcgcgggucgaaggcGaGCGCggcGCGCCAGg -3'
miRNA:   3'- -CUCagGGUCGCGU--------------C-CGCGa--CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 119105 0.67 0.510448
Target:  5'- --cUCCaCAacaCGCAGGCGC-GCGCCGGc -3'
miRNA:   3'- cucAGG-GUc--GCGUCCGCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 130807 0.67 0.510448
Target:  5'- gGAGagCCAGCuGUGGGCccuGCUGCGgCGGg -3'
miRNA:   3'- -CUCagGGUCG-CGUCCG---CGACGCgGUC- -5'
21585 3' -62.7 NC_004812.1 + 19530 0.67 0.510448
Target:  5'- cGAG-CCCGGCGUcaGGGCGCgGUGgaucgcgaagcCCAGg -3'
miRNA:   3'- -CUCaGGGUCGCG--UCCGCGaCGC-----------GGUC- -5'
21585 3' -62.7 NC_004812.1 + 56905 0.67 0.510448
Target:  5'- cAG-CCCugGGCGCAGGCGCcGcCGCaCGGc -3'
miRNA:   3'- cUCaGGG--UCGCGUCCGCGaC-GCG-GUC- -5'
21585 3' -62.7 NC_004812.1 + 122166 0.67 0.510448
Target:  5'- cGGGcCUgGGCGCGGGC-CUGgGCCuGg -3'
miRNA:   3'- -CUCaGGgUCGCGUCCGcGACgCGGuC- -5'
21585 3' -62.7 NC_004812.1 + 71111 0.67 0.510448
Target:  5'- cGGUUUCGGuCGgAGGCGCggGCGCCu- -3'
miRNA:   3'- cUCAGGGUC-GCgUCCGCGa-CGCGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.