miRNA display CGI


Results 121 - 140 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 56905 0.67 0.510448
Target:  5'- cAG-CCCugGGCGCAGGCGCcGcCGCaCGGc -3'
miRNA:   3'- cUCaGGG--UCGCGUCCGCGaC-GCG-GUC- -5'
21585 3' -62.7 NC_004812.1 + 23493 0.67 0.501062
Target:  5'- aGGGUgUgCGGCGggcCGGGCGCggcgGCGCCGGc -3'
miRNA:   3'- -CUCA-GgGUCGC---GUCCGCGa---CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 1292 0.67 0.501062
Target:  5'- aGGGUCCC--CGgAGGCGggGCGCCGa -3'
miRNA:   3'- -CUCAGGGucGCgUCCGCgaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 100784 0.67 0.501062
Target:  5'- cGAG-CagAGCGacgagAGGCGCUGCGCCGc -3'
miRNA:   3'- -CUCaGggUCGCg----UCCGCGACGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 149693 0.67 0.501062
Target:  5'- ---cCCCGGCccGCGGGCGCagcGCGCCc- -3'
miRNA:   3'- cucaGGGUCG--CGUCCGCGa--CGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 30949 0.67 0.501062
Target:  5'- cGGGcCgCgGGCGCGgcGGCGCgGCGCCAc -3'
miRNA:   3'- -CUCaG-GgUCGCGU--CCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 31694 0.67 0.501062
Target:  5'- -cGUCCUcgccGGCGCAGGC-CUcCGUCAGg -3'
miRNA:   3'- cuCAGGG----UCGCGUCCGcGAcGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 136378 0.67 0.501062
Target:  5'- aGGUCCCGGCGgccGCGCUagccguugcggGCGCCAc -3'
miRNA:   3'- cUCAGGGUCGCgucCGCGA-----------CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 48 0.67 0.501062
Target:  5'- cGGGcCgCgGGCGCGgcGGCGCgGCGCCAc -3'
miRNA:   3'- -CUCaG-GgUCGCGU--CCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 149001 0.67 0.501062
Target:  5'- aGGGUgUgCGGCGggcCGGGCGCggcgGCGCCGGc -3'
miRNA:   3'- -CUCA-GgGUCGC---GUCCGCGa---CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 121731 0.67 0.501062
Target:  5'- aGGUgCCCGG-GCcGGCGCgcggcgggggGCGCCGGg -3'
miRNA:   3'- cUCA-GGGUCgCGuCCGCGa---------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 57678 0.67 0.501062
Target:  5'- cGGGUCUCuuccgGGCGCcGGcCGCgUGCGCCGc -3'
miRNA:   3'- -CUCAGGG-----UCGCGuCC-GCG-ACGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 54682 0.67 0.501062
Target:  5'- cGGGUCgCGGCGaggaGGGCGa-GgGCCAGg -3'
miRNA:   3'- -CUCAGgGUCGCg---UCCGCgaCgCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 126800 0.67 0.501062
Target:  5'- aGGGUCCC--CGgAGGCGggGCGCCGa -3'
miRNA:   3'- -CUCAGGGucGCgUCCGCgaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 35861 0.67 0.501062
Target:  5'- gGGGUCgCUGGCGCAGGCGggGgGgUAGg -3'
miRNA:   3'- -CUCAG-GGUCGCGUCCGCgaCgCgGUC- -5'
21585 3' -62.7 NC_004812.1 + 156458 0.67 0.501062
Target:  5'- cGGGcCgCgGGCGCGgcGGCGCgGCGCCAc -3'
miRNA:   3'- -CUCaG-GgUCGCGU--CCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 34141 0.67 0.500127
Target:  5'- ---aCCCGGCGCccgccagGGGCGCccGCGCCc- -3'
miRNA:   3'- cucaGGGUCGCG-------UCCGCGa-CGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 3240 0.67 0.500127
Target:  5'- ---aCCCGGCGCccgccagGGGCGCccGCGCCc- -3'
miRNA:   3'- cucaGGGUCGCG-------UCCGCGa-CGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 7957 0.67 0.495467
Target:  5'- -cGUCCgGggggggccgagagacGCGgAGGCGCgcggGCGCCGGu -3'
miRNA:   3'- cuCAGGgU---------------CGCgUCCGCGa---CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 11614 0.67 0.491752
Target:  5'- aGGGUCCguagCGGCGCacggccAGGCGCUcCGuCCAGa -3'
miRNA:   3'- -CUCAGG----GUCGCG------UCCGCGAcGC-GGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.