Results 141 - 160 of 262 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21585 | 3' | -62.7 | NC_004812.1 | + | 23400 | 0.67 | 0.491752 |
Target: 5'- cGAGcgUCCGGCGaCGGGCGUccggcgGCGUCGGc -3' miRNA: 3'- -CUCa-GGGUCGC-GUCCGCGa-----CGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 13494 | 0.67 | 0.491752 |
Target: 5'- -cGUCCguCAGCGcCAGGCGCgGgGCCc- -3' miRNA: 3'- cuCAGG--GUCGC-GUCCGCGaCgCGGuc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 43487 | 0.67 | 0.491752 |
Target: 5'- aGGUCgCGGCGCGucucGGUGC-GCGUCAGc -3' miRNA: 3'- cUCAGgGUCGCGU----CCGCGaCGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 11614 | 0.67 | 0.491752 |
Target: 5'- aGGGUCCguagCGGCGCacggccAGGCGCUcCGuCCAGa -3' miRNA: 3'- -CUCAGG----GUCGCG------UCCGCGAcGC-GGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 137563 | 0.67 | 0.491752 |
Target: 5'- cGGUCUCGGcCGCcgcggccgagAGGCugccgcccgcGCUGCGCCGGc -3' miRNA: 3'- cUCAGGGUC-GCG----------UCCG----------CGACGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 148908 | 0.67 | 0.491752 |
Target: 5'- cGAGcgUCCGGCGaCGGGCGUccggcgGCGUCGGc -3' miRNA: 3'- -CUCa-GGGUCGC-GUCCGCGa-----CGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 113748 | 0.67 | 0.491752 |
Target: 5'- -cGUCCUcgugacgcuGGCGCGccugccgacGGCGCcaaGCGCCAGa -3' miRNA: 3'- cuCAGGG---------UCGCGU---------CCGCGa--CGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 96260 | 0.67 | 0.491752 |
Target: 5'- -cGUCCgaGGCGCGGGCGggccugGCGCCc- -3' miRNA: 3'- cuCAGGg-UCGCGUCCGCga----CGCGGuc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 77135 | 0.68 | 0.482523 |
Target: 5'- -cGUCCuCGGC-CAGGCGCcGCGUCu- -3' miRNA: 3'- cuCAGG-GUCGcGUCCGCGaCGCGGuc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 68453 | 0.68 | 0.482523 |
Target: 5'- gGGGcUCCCGGUGguGGcCGCgGCGCgCAc -3' miRNA: 3'- -CUC-AGGGUCGCguCC-GCGaCGCG-GUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 46643 | 0.68 | 0.473379 |
Target: 5'- cGGGcgCCCggaaacagcAGCGCcacggccgccaGGGCGCcGCGCCGGa -3' miRNA: 3'- -CUCa-GGG---------UCGCG-----------UCCGCGaCGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 99611 | 0.68 | 0.473379 |
Target: 5'- -uGUUCCAGCuggagcuccuCAGGCGCUGCGacccCCGGa -3' miRNA: 3'- cuCAGGGUCGc---------GUCCGCGACGC----GGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 107417 | 0.68 | 0.473379 |
Target: 5'- uGAGcaugCCCAGCuGCAGGCGgUUGU-CCAGg -3' miRNA: 3'- -CUCa---GGGUCG-CGUCCGC-GACGcGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 144096 | 0.68 | 0.464322 |
Target: 5'- gGAGUCCCcGCuGCcguacguGGUGCUGCGCg-- -3' miRNA: 3'- -CUCAGGGuCG-CGu------CCGCGACGCGguc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 55304 | 0.68 | 0.464322 |
Target: 5'- cGAGgugggCUCGGCGCGGGCcgacGCccggGCGUCGGa -3' miRNA: 3'- -CUCa----GGGUCGCGUCCG----CGa---CGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 5385 | 0.68 | 0.464322 |
Target: 5'- cGAGUCgCGGCGCGGG-GCcggggGCGUCGc -3' miRNA: 3'- -CUCAGgGUCGCGUCCgCGa----CGCGGUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 19757 | 0.68 | 0.464322 |
Target: 5'- cAG-CCCGGUGCGGGggucccaggcgaCGC-GCGCCGGg -3' miRNA: 3'- cUCaGGGUCGCGUCC------------GCGaCGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 100907 | 0.68 | 0.464322 |
Target: 5'- cGAG-CgCgGGUGCAGGCGC-GCGCCc- -3' miRNA: 3'- -CUCaG-GgUCGCGUCCGCGaCGCGGuc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 30811 | 0.68 | 0.464322 |
Target: 5'- aGGGcCCCacgggGGgGCAGG-GCgGCGCCAGg -3' miRNA: 3'- -CUCaGGG-----UCgCGUCCgCGaCGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 85636 | 0.68 | 0.464322 |
Target: 5'- -cGUUCCGGCcccacGCcucgGGGCGCUgGUGCCGGg -3' miRNA: 3'- cuCAGGGUCG-----CG----UCCGCGA-CGCGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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