miRNA display CGI


Results 41 - 60 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 27480 0.66 0.577919
Target:  5'- -cGcCCCGGCGCggaGGGCGCaGuCGCCc- -3'
miRNA:   3'- cuCaGGGUCGCG---UCCGCGaC-GCGGuc -5'
21585 3' -62.7 NC_004812.1 + 28138 0.68 0.455357
Target:  5'- -cGUCUCGGCGCuGGGCGCgcaggGCGUg-- -3'
miRNA:   3'- cuCAGGGUCGCG-UCCGCGa----CGCGguc -5'
21585 3' -62.7 NC_004812.1 + 28408 0.66 0.60749
Target:  5'- --uUCCCGGUacaccucggcccGCAGGUGCgucucCGCCAGg -3'
miRNA:   3'- cucAGGGUCG------------CGUCCGCGac---GCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 29147 0.67 0.529435
Target:  5'- ---cCCCGGCGCccGGCGC-GCGCgCGGc -3'
miRNA:   3'- cucaGGGUCGCGu-CCGCGaCGCG-GUC- -5'
21585 3' -62.7 NC_004812.1 + 29238 0.69 0.387239
Target:  5'- gGGGUCgCGGaggaGCGGGCcgggGCUGCGCgGGg -3'
miRNA:   3'- -CUCAGgGUCg---CGUCCG----CGACGCGgUC- -5'
21585 3' -62.7 NC_004812.1 + 30084 0.66 0.60749
Target:  5'- cGGGcCCUcGCGgGGGCGCgGCcccgGCCGGg -3'
miRNA:   3'- -CUCaGGGuCGCgUCCGCGaCG----CGGUC- -5'
21585 3' -62.7 NC_004812.1 + 30391 0.66 0.587748
Target:  5'- cGGGg-CCGGCGCccGGGCuGCcGCGCCGa -3'
miRNA:   3'- -CUCagGGUCGCG--UCCG-CGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 30512 0.66 0.587748
Target:  5'- aGGGgacgCCCGGgGcCGGGgGCcGCGCCGc -3'
miRNA:   3'- -CUCa---GGGUCgC-GUCCgCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 30811 0.68 0.464322
Target:  5'- aGGGcCCCacgggGGgGCAGG-GCgGCGCCAGg -3'
miRNA:   3'- -CUCaGGG-----UCgCGUCCgCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 30949 0.67 0.501062
Target:  5'- cGGGcCgCgGGCGCGgcGGCGCgGCGCCAc -3'
miRNA:   3'- -CUCaG-GgUCGCGU--CCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 31397 0.66 0.576938
Target:  5'- -cGUUCUcgAGCaggaccgGCAGGCGCcGCGCCAc -3'
miRNA:   3'- cuCAGGG--UCG-------CGUCCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 31614 0.66 0.60749
Target:  5'- -cGUCggcgUCGGCGCcGGCGCgGuCGCCGGc -3'
miRNA:   3'- cuCAG----GGUCGCGuCCGCGaC-GCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 31694 0.67 0.501062
Target:  5'- -cGUCCUcgccGGCGCAGGC-CUcCGUCAGg -3'
miRNA:   3'- cuCAGGG----UCGCGUCCGcGAcGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 32413 0.69 0.395383
Target:  5'- cGGUCgCCGcCGCGGGCGCggccGCGCcCAGc -3'
miRNA:   3'- cUCAG-GGUcGCGUCCGCGa---CGCG-GUC- -5'
21585 3' -62.7 NC_004812.1 + 32463 0.67 0.539025
Target:  5'- aAGUgCCGGCaCAGGCGCgugagGCGCg-- -3'
miRNA:   3'- cUCAgGGUCGcGUCCGCGa----CGCGguc -5'
21585 3' -62.7 NC_004812.1 + 34141 0.67 0.500127
Target:  5'- ---aCCCGGCGCccgccagGGGCGCccGCGCCc- -3'
miRNA:   3'- cucaGGGUCGCG-------UCCGCGa-CGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 35701 0.67 0.539025
Target:  5'- cGAGggCUGGUGCGGGCGCgGgGUCGGc -3'
miRNA:   3'- -CUCagGGUCGCGUCCGCGaCgCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 35861 0.67 0.501062
Target:  5'- gGGGUCgCUGGCGCAGGCGggGgGgUAGg -3'
miRNA:   3'- -CUCAG-GGUCGCGUCCGCgaCgCgGUC- -5'
21585 3' -62.7 NC_004812.1 + 36020 0.66 0.547707
Target:  5'- gGGGUCCgGgGgGCGGGCGCggagGCgggagggccgcggGCCAGa -3'
miRNA:   3'- -CUCAGGgU-CgCGUCCGCGa---CG-------------CGGUC- -5'
21585 3' -62.7 NC_004812.1 + 36371 0.66 0.587748
Target:  5'- uGGG-CgCAGCcgaagacggGCAGGgGCUGgGCCGGg -3'
miRNA:   3'- -CUCaGgGUCG---------CGUCCgCGACgCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.