miRNA display CGI


Results 61 - 80 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 37618 0.66 0.601557
Target:  5'- cAGUCCCGGUGCGcguccagcugcucgcGGCGCaUGagGCCGu -3'
miRNA:   3'- cUCAGGGUCGCGU---------------CCGCG-ACg-CGGUc -5'
21585 3' -62.7 NC_004812.1 + 37663 0.69 0.411998
Target:  5'- cAGUCCCacaccAGCGgGGGCaGCaGCGCCGc -3'
miRNA:   3'- cUCAGGG-----UCGCgUCCG-CGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 37809 0.69 0.411998
Target:  5'- uGGUCUCGGgGC--GCGCUGCGCCc- -3'
miRNA:   3'- cUCAGGGUCgCGucCGCGACGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 38613 0.71 0.31907
Target:  5'- cGAGUCCgCGGCGgGGGUcuCcGCGCCGGg -3'
miRNA:   3'- -CUCAGG-GUCGCgUCCGc-GaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 41158 0.74 0.196045
Target:  5'- cGAG-CCCAGCGgcgcgccgcCAGGCGCUcucggcgccGCGCCGGu -3'
miRNA:   3'- -CUCaGGGUCGC---------GUCCGCGA---------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 42016 0.72 0.266381
Target:  5'- cGGGUCgaUGGCGgGGGCGCgcgGCGCCAa -3'
miRNA:   3'- -CUCAGg-GUCGCgUCCGCGa--CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 43036 0.67 0.539025
Target:  5'- gGGGUCCUggGGcCGCAGGgGCagguUGUGCUGGa -3'
miRNA:   3'- -CUCAGGG--UC-GCGUCCgCG----ACGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 43487 0.67 0.491752
Target:  5'- aGGUCgCGGCGCGucucGGUGC-GCGUCAGc -3'
miRNA:   3'- cUCAGgGUCGCGU----CCGCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 43667 0.72 0.278858
Target:  5'- --uUCaCCAGCGaCAcGGCGCUGCGCgGGc -3'
miRNA:   3'- cucAG-GGUCGC-GU-CCGCGACGCGgUC- -5'
21585 3' -62.7 NC_004812.1 + 43760 0.66 0.598594
Target:  5'- uGAG-CCCAGCGCgugagcgccgAGGCcacgcccugcgucuuCUGCGCCAu -3'
miRNA:   3'- -CUCaGGGUCGCG----------UCCGc--------------GACGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 43860 0.66 0.597607
Target:  5'- -cGUCCgGGCGCGgcGGCGCcGcCGCgCGGu -3'
miRNA:   3'- cuCAGGgUCGCGU--CCGCGaC-GCG-GUC- -5'
21585 3' -62.7 NC_004812.1 + 44321 0.69 0.429038
Target:  5'- cGAGcucggCCCGG-GCGGGCGCgGC-CCAGa -3'
miRNA:   3'- -CUCa----GGGUCgCGUCCGCGaCGcGGUC- -5'
21585 3' -62.7 NC_004812.1 + 45170 0.7 0.340752
Target:  5'- gGGGUUCCAGa-CGGGCGCgUGCGUCAc -3'
miRNA:   3'- -CUCAGGGUCgcGUCCGCG-ACGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 46438 0.78 0.113622
Target:  5'- --cUCCCcugGGCGCuGGCGCUGgGCCAGg -3'
miRNA:   3'- cucAGGG---UCGCGuCCGCGACgCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 46643 0.68 0.473379
Target:  5'- cGGGcgCCCggaaacagcAGCGCcacggccgccaGGGCGCcGCGCCGGa -3'
miRNA:   3'- -CUCa-GGG---------UCGCG-----------UCCGCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 46897 0.7 0.348213
Target:  5'- -cGcCCCGGgGCGGGCGCgGCgGCCGc -3'
miRNA:   3'- cuCaGGGUCgCGUCCGCGaCG-CGGUc -5'
21585 3' -62.7 NC_004812.1 + 47047 0.66 0.577919
Target:  5'- gGGGUUUgcGUGCGGGCGUccUGCGUCAGc -3'
miRNA:   3'- -CUCAGGguCGCGUCCGCG--ACGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 47268 0.66 0.568127
Target:  5'- cGAGUCUaCGGCGCcccgguaGCGCgGCGCCGc -3'
miRNA:   3'- -CUCAGG-GUCGCGuc-----CGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 48112 0.72 0.254359
Target:  5'- ---gCCCcGUGCGGGCGCUGgCGCCGu -3'
miRNA:   3'- cucaGGGuCGCGUCCGCGAC-GCGGUc -5'
21585 3' -62.7 NC_004812.1 + 48146 0.66 0.577919
Target:  5'- -cGUCCU--CG-AGGCGCgGCGCCGGg -3'
miRNA:   3'- cuCAGGGucGCgUCCGCGaCGCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.