miRNA display CGI


Results 81 - 100 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 50465 0.68 0.437712
Target:  5'- cGAG-CUCGGCcucgGCGGGCGCgugugGaCGCCGGg -3'
miRNA:   3'- -CUCaGGGUCG----CGUCCGCGa----C-GCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 51001 0.66 0.558377
Target:  5'- cAGUCCCcuggaAGCGCAGauCGCcGCGCUGGu -3'
miRNA:   3'- cUCAGGG-----UCGCGUCc-GCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 51177 0.73 0.242786
Target:  5'- --uUCCCGacucGgGCGGGCGCggGCGCCGGg -3'
miRNA:   3'- cucAGGGU----CgCGUCCGCGa-CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 51519 0.72 0.254359
Target:  5'- aGGGUCCCgcccccGGCGCAgcGGCGCcgggGgGCCAGu -3'
miRNA:   3'- -CUCAGGG------UCGCGU--CCGCGa---CgCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 51558 0.7 0.333408
Target:  5'- -cGUCCCggcgAGCGCAcGCGCagccggagGCGCCGGg -3'
miRNA:   3'- cuCAGGG----UCGCGUcCGCGa-------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 53849 0.67 0.519908
Target:  5'- cGGUCCgCGGCGUAGGCcgUGUGCuCGGc -3'
miRNA:   3'- cUCAGG-GUCGCGUCCGcgACGCG-GUC- -5'
21585 3' -62.7 NC_004812.1 + 54542 0.69 0.411998
Target:  5'- uGGUgCCCGGCGCGcccGGCGCgGCcCCGGc -3'
miRNA:   3'- cUCA-GGGUCGCGU---CCGCGaCGcGGUC- -5'
21585 3' -62.7 NC_004812.1 + 54682 0.67 0.501062
Target:  5'- cGGGUCgCGGCGaggaGGGCGa-GgGCCAGg -3'
miRNA:   3'- -CUCAGgGUCGCg---UCCGCgaCgCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 55255 0.66 0.586764
Target:  5'- uAGUa-CAGCGCgguguugGGGgGCUGgGCCAGg -3'
miRNA:   3'- cUCAggGUCGCG-------UCCgCGACgCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 55304 0.68 0.464322
Target:  5'- cGAGgugggCUCGGCGCGGGCcgacGCccggGCGUCGGa -3'
miRNA:   3'- -CUCa----GGGUCGCGUCCG----CGa---CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 55957 0.66 0.568127
Target:  5'- cGAGgCCCGGC-CcGGCGCggcucGCGCCGc -3'
miRNA:   3'- -CUCaGGGUCGcGuCCGCGa----CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 56304 0.67 0.519908
Target:  5'- uGGUCCagcacGCGCAGcGCGCgcgcgcGCGCCGc -3'
miRNA:   3'- cUCAGGgu---CGCGUC-CGCGa-----CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 56905 0.67 0.510448
Target:  5'- cAG-CCCugGGCGCAGGCGCcGcCGCaCGGc -3'
miRNA:   3'- cUCaGGG--UCGCGUCCGCGaC-GCG-GUC- -5'
21585 3' -62.7 NC_004812.1 + 56922 0.7 0.370502
Target:  5'- cGAGUCCCuggcggaGGCGgGGGCGUcuagcgGCGCCc- -3'
miRNA:   3'- -CUCAGGG-------UCGCgUCCGCGa-----CGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 57135 0.7 0.371287
Target:  5'- -uGUCUgugGGCGCGGGCGCagGCGCCc- -3'
miRNA:   3'- cuCAGGg--UCGCGUCCGCGa-CGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 57678 0.67 0.501062
Target:  5'- cGGGUCUCuuccgGGCGCcGGcCGCgUGCGCCGc -3'
miRNA:   3'- -CUCAGGG-----UCGCGuCC-GCG-ACGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 57826 0.68 0.455357
Target:  5'- gGGGUCCCGuCGCcccacuacgAGGCcucGCUGCGCCu- -3'
miRNA:   3'- -CUCAGGGUcGCG---------UCCG---CGACGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 58360 0.7 0.348213
Target:  5'- cGGGUCCCGGCcucCAGG-GCcGCGCCGc -3'
miRNA:   3'- -CUCAGGGUCGc--GUCCgCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 58833 0.67 0.519908
Target:  5'- --cUCCgaGGCGUuGGCGCcgGCGCCGGc -3'
miRNA:   3'- cucAGGg-UCGCGuCCGCGa-CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 59581 0.66 0.572039
Target:  5'- uGGUCCCgaagacgccgaugggGGCGCGggcGGCGCUcGCGaaCCGGg -3'
miRNA:   3'- cUCAGGG---------------UCGCGU---CCGCGA-CGC--GGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.