miRNA display CGI


Results 101 - 120 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 59656 0.66 0.548675
Target:  5'- uGGUgUgGGCGCAGGCGUgccGCGucuCCAGg -3'
miRNA:   3'- cUCAgGgUCGCGUCCGCGa--CGC---GGUC- -5'
21585 3' -62.7 NC_004812.1 + 59666 0.68 0.446486
Target:  5'- cGGg-CCGGCGCGGGCGCcGCGUUg- -3'
miRNA:   3'- cUCagGGUCGCGUCCGCGaCGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 62469 0.7 0.333408
Target:  5'- ---cCCCAGCGC-GGCGgcCUGCGuCCAGa -3'
miRNA:   3'- cucaGGGUCGCGuCCGC--GACGC-GGUC- -5'
21585 3' -62.7 NC_004812.1 + 67762 0.67 0.529435
Target:  5'- cGGUCCCGGgGgAGGCGgCgGC-CCGGg -3'
miRNA:   3'- cUCAGGGUCgCgUCCGC-GaCGcGGUC- -5'
21585 3' -62.7 NC_004812.1 + 68173 0.66 0.577919
Target:  5'- aGGGUCggCGGcCGCGGGCGggggcGCGCCGGa -3'
miRNA:   3'- -CUCAGg-GUC-GCGUCCGCga---CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 68453 0.68 0.482523
Target:  5'- gGGGcUCCCGGUGguGGcCGCgGCGCgCAc -3'
miRNA:   3'- -CUC-AGGGUCGCguCC-GCGaCGCG-GUc -5'
21585 3' -62.7 NC_004812.1 + 69837 0.66 0.587748
Target:  5'- cGGUCgCCcucGCGCccgcgucGCGCUGCGCCAu -3'
miRNA:   3'- cUCAG-GGu--CGCGuc-----CGCGACGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 71111 0.67 0.510448
Target:  5'- cGGUUUCGGuCGgAGGCGCggGCGCCu- -3'
miRNA:   3'- cUCAGGGUC-GCgUCCGCGa-CGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 71181 0.71 0.325464
Target:  5'- uGGUCCCGGCGCugacgguAGGUGaa-CGCCAGg -3'
miRNA:   3'- cUCAGGGUCGCG-------UCCGCgacGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 72870 0.73 0.231655
Target:  5'- -----aCAGCGCGGGCaGCUGCGCCGc -3'
miRNA:   3'- cucaggGUCGCGUCCG-CGACGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 73401 0.66 0.548675
Target:  5'- cGAGgccCCCgAGCGCGGcCGCcGCGCCu- -3'
miRNA:   3'- -CUCa--GGG-UCGCGUCcGCGaCGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 73437 0.67 0.539025
Target:  5'- cGAGcUCCGGgGCcGcGCGCcacgGCGCCAGg -3'
miRNA:   3'- -CUCaGGGUCgCGuC-CGCGa---CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 73775 0.67 0.523711
Target:  5'- cGGGUgCCCgcgggcuccgcgagcGGgGCGGGCGCcgGCGCCc- -3'
miRNA:   3'- -CUCA-GGG---------------UCgCGUCCGCGa-CGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 74051 0.66 0.568127
Target:  5'- cGAGcCCCucgggcggcAGCgGCGGGCGC-GCGCgGGc -3'
miRNA:   3'- -CUCaGGG---------UCG-CGUCCGCGaCGCGgUC- -5'
21585 3' -62.7 NC_004812.1 + 74377 0.67 0.533264
Target:  5'- gGGGUCCCgcccgcgcccguuugGGCGCGGGCcuugGCguacGCGCUAu -3'
miRNA:   3'- -CUCAGGG---------------UCGCGUCCG----CGa---CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 74379 0.67 0.529435
Target:  5'- cGAGUCggccgaaCGGCGCuucGGCGC-GgGCCGGg -3'
miRNA:   3'- -CUCAGg------GUCGCGu--CCGCGaCgCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 77135 0.68 0.482523
Target:  5'- -cGUCCuCGGC-CAGGCGCcGCGUCu- -3'
miRNA:   3'- cuCAGG-GUCGcGUCCGCGaCGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 78990 0.72 0.254359
Target:  5'- cGGUUUaCAGCGCcaAGGCGCUGCugGCCGGg -3'
miRNA:   3'- cUCAGG-GUCGCG--UCCGCGACG--CGGUC- -5'
21585 3' -62.7 NC_004812.1 + 80267 0.69 0.395383
Target:  5'- cGGaCCUGGCGguGGCGgUGCGgCGGg -3'
miRNA:   3'- cUCaGGGUCGCguCCGCgACGCgGUC- -5'
21585 3' -62.7 NC_004812.1 + 82388 0.66 0.568127
Target:  5'- gGAGaCCCGGgGCcccuGGaGCUGCGCgAGg -3'
miRNA:   3'- -CUCaGGGUCgCGu---CCgCGACGCGgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.