miRNA display CGI


Results 121 - 140 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 82672 0.66 0.59662
Target:  5'- -cGUCUggugCAGCagggcgaGCAGGCGCcgcuggGCGCCGGc -3'
miRNA:   3'- cuCAGG----GUCG-------CGUCCGCGa-----CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 82831 0.69 0.395383
Target:  5'- -cGUCUCAGCGUacccggGGGUGCgcGCGCCGa -3'
miRNA:   3'- cuCAGGGUCGCG------UCCGCGa-CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 83282 0.67 0.529435
Target:  5'- --uUCCgAGCGC-GGCGCUG-GCCGc -3'
miRNA:   3'- cucAGGgUCGCGuCCGCGACgCGGUc -5'
21585 3' -62.7 NC_004812.1 + 83725 0.66 0.577919
Target:  5'- gGGGUUucugCCGGggaCGCGGGCccgGCUGCcGCCAGg -3'
miRNA:   3'- -CUCAG----GGUC---GCGUCCG---CGACG-CGGUC- -5'
21585 3' -62.7 NC_004812.1 + 83908 0.7 0.347461
Target:  5'- uGGUCCgAGCGUugucggaAGGCGUUGCuGCCGu -3'
miRNA:   3'- cUCAGGgUCGCG-------UCCGCGACG-CGGUc -5'
21585 3' -62.7 NC_004812.1 + 84688 0.66 0.548675
Target:  5'- -cGUCCucgccgcugCAGCGCccgcGGCGCcGCGCCGc -3'
miRNA:   3'- cuCAGG---------GUCGCGu---CCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 85636 0.68 0.464322
Target:  5'- -cGUUCCGGCcccacGCcucgGGGCGCUgGUGCCGGg -3'
miRNA:   3'- cuCAGGGUCG-----CG----UCCGCGA-CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 86748 0.66 0.572039
Target:  5'- gGGGUCCgcgucggccauggcgCAGCggcgacGCGGGCGCgaggGCGaCCGGg -3'
miRNA:   3'- -CUCAGG---------------GUCG------CGUCCGCGa---CGC-GGUC- -5'
21585 3' -62.7 NC_004812.1 + 87730 0.67 0.529435
Target:  5'- gGAGg--CGGCGCGGGCGCcgGgGCCGc -3'
miRNA:   3'- -CUCaggGUCGCGUCCGCGa-CgCGGUc -5'
21585 3' -62.7 NC_004812.1 + 89295 0.7 0.382407
Target:  5'- gGAGcCCCGGCGUc-GCGCUucgcgcaguucugcgGCGCCGGg -3'
miRNA:   3'- -CUCaGGGUCGCGucCGCGA---------------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 90068 0.66 0.577919
Target:  5'- gGAG-CCCAGCGCcuGCGa-GCGCgAGc -3'
miRNA:   3'- -CUCaGGGUCGCGucCGCgaCGCGgUC- -5'
21585 3' -62.7 NC_004812.1 + 90287 0.66 0.587748
Target:  5'- ---cUgCAGCGCGGGCGacggGCGCCuGg -3'
miRNA:   3'- cucaGgGUCGCGUCCGCga--CGCGGuC- -5'
21585 3' -62.7 NC_004812.1 + 94262 0.67 0.519908
Target:  5'- ---aCCCAcGCGCcgcGGGCGC-GCGCCGc -3'
miRNA:   3'- cucaGGGU-CGCG---UCCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 94343 0.68 0.455357
Target:  5'- uGGGUCUCcGCGCGcGGCGCgGCcCCGGc -3'
miRNA:   3'- -CUCAGGGuCGCGU-CCGCGaCGcGGUC- -5'
21585 3' -62.7 NC_004812.1 + 95006 0.68 0.455357
Target:  5'- gGAG-CUCGcucGCGCAGGUGCUGgggcuccacCGCCGGa -3'
miRNA:   3'- -CUCaGGGU---CGCGUCCGCGAC---------GCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 95054 0.68 0.437712
Target:  5'- gGGGUCCCGGCGCGaGCGgCUacGCGaCCGc -3'
miRNA:   3'- -CUCAGGGUCGCGUcCGC-GA--CGC-GGUc -5'
21585 3' -62.7 NC_004812.1 + 95483 0.67 0.519908
Target:  5'- uGGUUguUguGCGCGGGCGCcggcGCGCCGc -3'
miRNA:   3'- cUCAG--GguCGCGUCCGCGa---CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 96260 0.67 0.491752
Target:  5'- -cGUCCgaGGCGCGGGCGggccugGCGCCc- -3'
miRNA:   3'- cuCAGGg-UCGCGUCCGCga----CGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 97210 0.67 0.529435
Target:  5'- --aUCCUGGCGguGccacGCGCUGCGUgGGg -3'
miRNA:   3'- cucAGGGUCGCguC----CGCGACGCGgUC- -5'
21585 3' -62.7 NC_004812.1 + 97554 0.76 0.157359
Target:  5'- cAGUUCCAGC-C-GGUGCUGCGCCGGc -3'
miRNA:   3'- cUCAGGGUCGcGuCCGCGACGCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.