miRNA display CGI


Results 21 - 40 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 149001 0.67 0.501062
Target:  5'- aGGGUgUgCGGCGggcCGGGCGCggcgGCGCCGGc -3'
miRNA:   3'- -CUCA-GgGUCGC---GUCCGCGa---CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 148908 0.67 0.491752
Target:  5'- cGAGcgUCCGGCGaCGGGCGUccggcgGCGUCGGc -3'
miRNA:   3'- -CUCa-GGGUCGC-GUCCGCGa-----CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 148553 0.66 0.568127
Target:  5'- gGGGUCgcgggCCGGC-CGGGCGCcgggggGUGCCGGc -3'
miRNA:   3'- -CUCAG-----GGUCGcGUCCGCGa-----CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 148280 0.66 0.577919
Target:  5'- ---gCCCGGCaGCGcGGCgGCgGCGCCGGc -3'
miRNA:   3'- cucaGGGUCG-CGU-CCG-CGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 145930 0.66 0.577919
Target:  5'- -uGUaCCUGGUGacgugguuGGCGCUGCGCUGGg -3'
miRNA:   3'- cuCA-GGGUCGCgu------CCGCGACGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 145857 0.74 0.196045
Target:  5'- gGAGUCUC-GCGCAGGCGCgucGcCGCCGu -3'
miRNA:   3'- -CUCAGGGuCGCGUCCGCGa--C-GCGGUc -5'
21585 3' -62.7 NC_004812.1 + 145558 0.71 0.31907
Target:  5'- uGGUCCCGGgGuCGGGCGCcaccggcgGCGCCc- -3'
miRNA:   3'- cUCAGGGUCgC-GUCCGCGa-------CGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 144506 0.66 0.558377
Target:  5'- uGGUCCU-GCGCgAGGCGC-GCGUgGGc -3'
miRNA:   3'- cUCAGGGuCGCG-UCCGCGaCGCGgUC- -5'
21585 3' -62.7 NC_004812.1 + 144096 0.68 0.464322
Target:  5'- gGAGUCCCcGCuGCcguacguGGUGCUGCGCg-- -3'
miRNA:   3'- -CUCAGGGuCG-CGu------CCGCGACGCGguc -5'
21585 3' -62.7 NC_004812.1 + 142195 0.66 0.587748
Target:  5'- ----gCCGGCGCGGG-GCUGgcCGCCGGc -3'
miRNA:   3'- cucagGGUCGCGUCCgCGAC--GCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 141238 0.67 0.536142
Target:  5'- aGGUCCCuggggagggcguGGuCGCuaaggaacgccuccAGGCGCUGCGUCAc -3'
miRNA:   3'- cUCAGGG------------UC-GCG--------------UCCGCGACGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 141208 0.66 0.577919
Target:  5'- -cGUUCCGGCggGCGGGgGCgaguacGUGCCGGu -3'
miRNA:   3'- cuCAGGGUCG--CGUCCgCGa-----CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 140512 0.72 0.285269
Target:  5'- -cGUCUC-GCGCAGGCGCUcgaugGUGCCGa -3'
miRNA:   3'- cuCAGGGuCGCGUCCGCGA-----CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 138138 0.66 0.60749
Target:  5'- uGGGcCCCgcgGGCGCGGG-GCcGCGCCc- -3'
miRNA:   3'- -CUCaGGG---UCGCGUCCgCGaCGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 138029 0.68 0.446486
Target:  5'- ----gCCGGCGCGGGUGCgGCGgCGGc -3'
miRNA:   3'- cucagGGUCGCGUCCGCGaCGCgGUC- -5'
21585 3' -62.7 NC_004812.1 + 137844 0.71 0.32618
Target:  5'- aGGUCCUGGCGCuGGCGacggacgaggUGCGCCGc -3'
miRNA:   3'- cUCAGGGUCGCGuCCGCg---------ACGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 137563 0.67 0.491752
Target:  5'- cGGUCUCGGcCGCcgcggccgagAGGCugccgcccgcGCUGCGCCGGc -3'
miRNA:   3'- cUCAGGGUC-GCG----------UCCG----------CGACGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 137540 0.73 0.231655
Target:  5'- cGG-CCCGGCGCGGGC-CUGgGCCGc -3'
miRNA:   3'- cUCaGGGUCGCGUCCGcGACgCGGUc -5'
21585 3' -62.7 NC_004812.1 + 136908 0.67 0.519908
Target:  5'- cGGUCgCCGGCGCcGcGCGCcgccGCGCUGGa -3'
miRNA:   3'- cUCAG-GGUCGCGuC-CGCGa---CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 136378 0.67 0.501062
Target:  5'- aGGUCCCGGCGgccGCGCUagccguugcggGCGCCAc -3'
miRNA:   3'- cUCAGGGUCGCgucCGCGA-----------CGCGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.