miRNA display CGI


Results 41 - 60 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 136303 0.77 0.125707
Target:  5'- cGGUgCCuGCGCGcGCGCUGCGCCGGc -3'
miRNA:   3'- cUCAgGGuCGCGUcCGCGACGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 135819 0.69 0.395383
Target:  5'- cGG-CCUGGCGCAGcGC-CUGCGCUGGg -3'
miRNA:   3'- cUCaGGGUCGCGUC-CGcGACGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 135020 0.68 0.445604
Target:  5'- cAGUCCCuggggcgGGUGCGGaCGCUGCGUCuGg -3'
miRNA:   3'- cUCAGGG-------UCGCGUCcGCGACGCGGuC- -5'
21585 3' -62.7 NC_004812.1 + 134659 0.72 0.266381
Target:  5'- aGGUCCU-GCaGgAGGCGCUGCGCgAGg -3'
miRNA:   3'- cUCAGGGuCG-CgUCCGCGACGCGgUC- -5'
21585 3' -62.7 NC_004812.1 + 134224 0.66 0.577919
Target:  5'- gGAGUuuuaCCCAGaCGCuggcGGCGCgcuuugccGCGUCAGg -3'
miRNA:   3'- -CUCA----GGGUC-GCGu---CCGCGa-------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 133691 0.66 0.558377
Target:  5'- -cGUCCaGGCGCGGGgGC-GCgGCCAc -3'
miRNA:   3'- cuCAGGgUCGCGUCCgCGaCG-CGGUc -5'
21585 3' -62.7 NC_004812.1 + 130893 0.68 0.464322
Target:  5'- cGAGUCgCGGCGCGGG-GCcggggGCGUCGc -3'
miRNA:   3'- -CUCAGgGUCGCGUCCgCGa----CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 130807 0.67 0.510448
Target:  5'- gGAGagCCAGCuGUGGGCccuGCUGCGgCGGg -3'
miRNA:   3'- -CUCagGGUCG-CGUCCG---CGACGCgGUC- -5'
21585 3' -62.7 NC_004812.1 + 130711 0.69 0.395383
Target:  5'- -cGcCCgCGGCGCuGGGCGCggGCGCCGc -3'
miRNA:   3'- cuCaGG-GUCGCG-UCCGCGa-CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 130137 0.71 0.319775
Target:  5'- cGGGcgCCCacacgGGCGCGGGCGCgccggcggccucguaGCGCCGGc -3'
miRNA:   3'- -CUCa-GGG-----UCGCGUCCGCGa--------------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 129401 0.67 0.519908
Target:  5'- cAG-CCagaGGCGCGGGCGCggcgGCGCg-- -3'
miRNA:   3'- cUCaGGg--UCGCGUCCGCGa---CGCGguc -5'
21585 3' -62.7 NC_004812.1 + 129345 0.75 0.173622
Target:  5'- aGGUCCCcGCGCAGGCGCaugaGCaCCAGc -3'
miRNA:   3'- cUCAGGGuCGCGUCCGCGa---CGcGGUC- -5'
21585 3' -62.7 NC_004812.1 + 129236 0.73 0.231655
Target:  5'- gGAGcgcaCCUGGCGCGGGcCGC-GCGCCAGc -3'
miRNA:   3'- -CUCa---GGGUCGCGUCC-GCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 129032 0.66 0.558377
Target:  5'- cGGcCCCgGGgGCGGGgcCGCgGCGCCGGg -3'
miRNA:   3'- cUCaGGG-UCgCGUCC--GCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 128932 0.66 0.568127
Target:  5'- uGGGcCCCGGCgGCA--CGCgGCGCCAGc -3'
miRNA:   3'- -CUCaGGGUCG-CGUccGCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 128795 0.67 0.517062
Target:  5'- cGAGg-CCAGCGCGcgcgggucgaaggcGaGCGCggcGCGCCAGg -3'
miRNA:   3'- -CUCagGGUCGCGU--------------C-CGCGa--CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 128157 0.7 0.371287
Target:  5'- cGGaCCgGGuCGCGcGGCGCUGCGUCGGc -3'
miRNA:   3'- cUCaGGgUC-GCGU-CCGCGACGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 127936 0.69 0.411998
Target:  5'- ---cCCCAgcgcGCGCAGGCGCggugcgagUGCGCCu- -3'
miRNA:   3'- cucaGGGU----CGCGUCCGCG--------ACGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 127871 0.71 0.298439
Target:  5'- cGGG-CCCGGCGCGcgcGGCGUcgcgguccaGCGCCAGg -3'
miRNA:   3'- -CUCaGGGUCGCGU---CCGCGa--------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 127797 0.66 0.60749
Target:  5'- cGGGaCCaGGCuauuaaacaGCAGGCGCcGCGCCAc -3'
miRNA:   3'- -CUCaGGgUCG---------CGUCCGCGaCGCGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.