miRNA display CGI


Results 61 - 80 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 127507 0.66 0.558377
Target:  5'- cGGGUCCCgccggcGGuCGCucgGGGCGCcGaCGCCGGc -3'
miRNA:   3'- -CUCAGGG------UC-GCG---UCCGCGaC-GCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 126987 0.69 0.395383
Target:  5'- -cGUCCuCGGCGgGcggcGGCGgaGCGCCGGc -3'
miRNA:   3'- cuCAGG-GUCGCgU----CCGCgaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 126800 0.67 0.501062
Target:  5'- aGGGUCCC--CGgAGGCGggGCGCCGa -3'
miRNA:   3'- -CUCAGGGucGCgUCCGCgaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 125980 0.7 0.355789
Target:  5'- cGG-CCCuGaCGgGGGCGCUGUGUCAGg -3'
miRNA:   3'- cUCaGGGuC-GCgUCCGCGACGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 125634 0.68 0.435969
Target:  5'- -cGUCCCucgcgagugcgcGCGCGuGGCGCcGCGCCGc -3'
miRNA:   3'- cuCAGGGu-----------CGCGU-CCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 125224 0.74 0.205702
Target:  5'- uGAGUUCgGGCaGCAGGCGCgUGCGCacgCAGg -3'
miRNA:   3'- -CUCAGGgUCG-CGUCCGCG-ACGCG---GUC- -5'
21585 3' -62.7 NC_004812.1 + 124906 0.68 0.437712
Target:  5'- cGAGgCCCuGaCGgAGGC-CUGCGCCGGc -3'
miRNA:   3'- -CUCaGGGuC-GCgUCCGcGACGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 123770 0.66 0.577919
Target:  5'- -cGUCCCccCGaCGGGCGgaGCGCCc- -3'
miRNA:   3'- cuCAGGGucGC-GUCCGCgaCGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 122842 0.68 0.455357
Target:  5'- cGGUgCCGGCGCGcacggcguccucGGCGUcGCGCCGc -3'
miRNA:   3'- cUCAgGGUCGCGU------------CCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 122446 0.72 0.278223
Target:  5'- -cGUCUCcucgggcggcgggGGCGCGGGCGCcccuggcggGCGCCGGg -3'
miRNA:   3'- cuCAGGG-------------UCGCGUCCGCGa--------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 122351 0.68 0.437712
Target:  5'- gGGGuUCCCGGCGgGGGcCGggGCGCgGGg -3'
miRNA:   3'- -CUC-AGGGUCGCgUCC-GCgaCGCGgUC- -5'
21585 3' -62.7 NC_004812.1 + 122166 0.67 0.510448
Target:  5'- cGGGcCUgGGCGCGGGC-CUGgGCCuGg -3'
miRNA:   3'- -CUCaGGgUCGCGUCCGcGACgCGGuC- -5'
21585 3' -62.7 NC_004812.1 + 122091 0.66 0.60749
Target:  5'- uGAG-CgCCGGgGCGGGC-CUGgGUCAGg -3'
miRNA:   3'- -CUCaG-GGUCgCGUCCGcGACgCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 121906 0.66 0.594646
Target:  5'- cAGgCCgGGCGCGGGC-CUgaggucgggccugaGCGCCGGg -3'
miRNA:   3'- cUCaGGgUCGCGUCCGcGA--------------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 121731 0.67 0.501062
Target:  5'- aGGUgCCCGG-GCcGGCGCgcggcgggggGCGCCGGg -3'
miRNA:   3'- cUCA-GGGUCgCGuCCGCGa---------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 121063 0.66 0.597607
Target:  5'- cGAGccccUCCCcGCGCGGGCGUccCGCCc- -3'
miRNA:   3'- -CUC----AGGGuCGCGUCCGCGacGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 121007 0.68 0.43684
Target:  5'- -cGUCCUcGCGCggcgggccggGGGCGCUccccucgGCGCCGGc -3'
miRNA:   3'- cuCAGGGuCGCG----------UCCGCGA-------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 120926 0.66 0.568127
Target:  5'- aAGgCCCGGCGCc-GCGCacgcgGCGCCAc -3'
miRNA:   3'- cUCaGGGUCGCGucCGCGa----CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 119105 0.67 0.510448
Target:  5'- --cUCCaCAacaCGCAGGCGC-GCGCCGGc -3'
miRNA:   3'- cucAGG-GUc--GCGUCCGCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 118791 0.67 0.539025
Target:  5'- ---cCCCGGCcccGCGGGCGCagcGCGCCc- -3'
miRNA:   3'- cucaGGGUCG---CGUCCGCGa--CGCGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.