miRNA display CGI


Results 81 - 100 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 118453 0.66 0.597607
Target:  5'- cGGGcCCCGGCGC-GGUGCaggccacgugGCGCguGg -3'
miRNA:   3'- -CUCaGGGUCGCGuCCGCGa---------CGCGguC- -5'
21585 3' -62.7 NC_004812.1 + 117652 0.66 0.568127
Target:  5'- gGGGUCgcgggCCGGC-CGGGCGCcgggggGUGCCGGc -3'
miRNA:   3'- -CUCAG-----GGUCGcGUCCGCGa-----CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 117379 0.66 0.577919
Target:  5'- ---gCCCGGCaGCGcGGCgGCgGCGCCGGc -3'
miRNA:   3'- cucaGGGUCG-CGU-CCG-CGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 113779 0.66 0.587748
Target:  5'- ---aCCCuuGUGCGGGuCGUUGCGCCc- -3'
miRNA:   3'- cucaGGGu-CGCGUCC-GCGACGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 113748 0.67 0.491752
Target:  5'- -cGUCCUcgugacgcuGGCGCGccugccgacGGCGCcaaGCGCCAGa -3'
miRNA:   3'- cuCAGGG---------UCGCGU---------CCGCGa--CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 113473 0.66 0.587748
Target:  5'- cGGaCCCuGCGgGaguGcGUGCUGCGCCAGg -3'
miRNA:   3'- cUCaGGGuCGCgU---C-CGCGACGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 112227 0.66 0.60749
Target:  5'- uGG-CCCuGCGCGGcGCcgcggGCUGCGCCc- -3'
miRNA:   3'- cUCaGGGuCGCGUC-CG-----CGACGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 110996 0.67 0.491752
Target:  5'- -cGUCCCcGCGCccaugaGGGCGCUGgaGCgGGa -3'
miRNA:   3'- cuCAGGGuCGCG------UCCGCGACg-CGgUC- -5'
21585 3' -62.7 NC_004812.1 + 110505 0.66 0.548675
Target:  5'- cGAGgggCUgGcGUGCGGGCGcCUGCuGCCGGu -3'
miRNA:   3'- -CUCa--GGgU-CGCGUCCGC-GACG-CGGUC- -5'
21585 3' -62.7 NC_004812.1 + 110256 0.67 0.519908
Target:  5'- gGAGUCCC--CGC-GGUGCacgUGCGCCAa -3'
miRNA:   3'- -CUCAGGGucGCGuCCGCG---ACGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 110037 0.66 0.548675
Target:  5'- uAGUCCCcGgGCGGuGCGCgGCGacCCGGg -3'
miRNA:   3'- cUCAGGGuCgCGUC-CGCGaCGC--GGUC- -5'
21585 3' -62.7 NC_004812.1 + 108853 0.67 0.529435
Target:  5'- ---cCCCAGCGCcgcGGCGCUGaccucguuCGCCGc -3'
miRNA:   3'- cucaGGGUCGCGu--CCGCGAC--------GCGGUc -5'
21585 3' -62.7 NC_004812.1 + 108745 0.67 0.519908
Target:  5'- ----aCCuGCuGCAGGCGCUGCgGCUGGg -3'
miRNA:   3'- cucagGGuCG-CGUCCGCGACG-CGGUC- -5'
21585 3' -62.7 NC_004812.1 + 108554 0.66 0.587748
Target:  5'- cGAGUCgCuGCGCucgcugguGGCGC-GCGCCc- -3'
miRNA:   3'- -CUCAGgGuCGCGu-------CCGCGaCGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 107417 0.68 0.473379
Target:  5'- uGAGcaugCCCAGCuGCAGGCGgUUGU-CCAGg -3'
miRNA:   3'- -CUCa---GGGUCG-CGUCCGC-GACGcGGUC- -5'
21585 3' -62.7 NC_004812.1 + 107205 0.66 0.577919
Target:  5'- cGGGgCCaCGGCGCGGGCcGCcuggGCGUCGa -3'
miRNA:   3'- -CUCaGG-GUCGCGUCCG-CGa---CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 107132 0.66 0.548675
Target:  5'- cGAGcUCCAGCGCcgucAGGCGaaccaGCGCCGc -3'
miRNA:   3'- -CUCaGGGUCGCG----UCCGCga---CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 106748 0.66 0.545774
Target:  5'- -cGUCCgGGCGCgggggggucggaggAGGgGCgGCGUCGGg -3'
miRNA:   3'- cuCAGGgUCGCG--------------UCCgCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 106507 0.73 0.220957
Target:  5'- cGGGUCCgCGGCGCgGGGCGCcgGCgGCCGc -3'
miRNA:   3'- -CUCAGG-GUCGCG-UCCGCGa-CG-CGGUc -5'
21585 3' -62.7 NC_004812.1 + 105654 0.69 0.411157
Target:  5'- gGGGUacacCCCGGCGUgguggugGGGCGCguaCGCCGGg -3'
miRNA:   3'- -CUCA----GGGUCGCG-------UCCGCGac-GCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.