miRNA display CGI


Results 101 - 120 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 105084 0.71 0.312076
Target:  5'- ---cCCCGGCGC---CGCUGCGCCGGg -3'
miRNA:   3'- cucaGGGUCGCGuccGCGACGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 102889 0.66 0.577919
Target:  5'- -cGUCCguGCGCGGG-GCggcggaccgGCGCCu- -3'
miRNA:   3'- cuCAGGguCGCGUCCgCGa--------CGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 101933 0.7 0.348213
Target:  5'- gGGGcCCCggacgcgcGGCGCGGGCgGCggGCGUCAGg -3'
miRNA:   3'- -CUCaGGG--------UCGCGUCCG-CGa-CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 101318 0.7 0.347461
Target:  5'- cGAG-CCCAccucggcGUGCAGGCGCU-CGCCGc -3'
miRNA:   3'- -CUCaGGGU-------CGCGUCCGCGAcGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 101218 0.66 0.548675
Target:  5'- cGGcCgCCAGCagGGGCGCcGCGCCGGc -3'
miRNA:   3'- cUCaG-GGUCGcgUCCGCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 100907 0.68 0.464322
Target:  5'- cGAG-CgCgGGUGCAGGCGC-GCGCCc- -3'
miRNA:   3'- -CUCaG-GgUCGCGUCCGCGaCGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 100823 0.67 0.519908
Target:  5'- -cGUCUCgGGgGCGGGCGCcGCgacGCCGGg -3'
miRNA:   3'- cuCAGGG-UCgCGUCCGCGaCG---CGGUC- -5'
21585 3' -62.7 NC_004812.1 + 100784 0.67 0.501062
Target:  5'- cGAG-CagAGCGacgagAGGCGCUGCGCCGc -3'
miRNA:   3'- -CUCaGggUCGCg----UCCGCGACGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 100719 0.7 0.379207
Target:  5'- -cGUCgCCAGCGCGGuGUGCaGCGCgUAGa -3'
miRNA:   3'- cuCAG-GGUCGCGUC-CGCGaCGCG-GUC- -5'
21585 3' -62.7 NC_004812.1 + 100367 0.69 0.395383
Target:  5'- cGGUUCCGGCGCccgccgccgggGGGCGCgagGCcaccgGCCGGa -3'
miRNA:   3'- cUCAGGGUCGCG-----------UCCGCGa--CG-----CGGUC- -5'
21585 3' -62.7 NC_004812.1 + 99899 0.66 0.577919
Target:  5'- cGAGUCCCucgGGCGUGGGCaggagGCaGcCGCCGa -3'
miRNA:   3'- -CUCAGGG---UCGCGUCCG-----CGaC-GCGGUc -5'
21585 3' -62.7 NC_004812.1 + 99692 0.66 0.597607
Target:  5'- aGGUCCgCGccGUGCGgcGGCGcCUGCGcCCAGg -3'
miRNA:   3'- cUCAGG-GU--CGCGU--CCGC-GACGC-GGUC- -5'
21585 3' -62.7 NC_004812.1 + 99611 0.68 0.473379
Target:  5'- -uGUUCCAGCuggagcuccuCAGGCGCUGCGacccCCGGa -3'
miRNA:   3'- cuCAGGGUCGc---------GUCCGCGACGC----GGUC- -5'
21585 3' -62.7 NC_004812.1 + 99378 0.71 0.298439
Target:  5'- cGAG-CCgCAGCGCcgugucGGCGCUGCGgCGGc -3'
miRNA:   3'- -CUCaGG-GUCGCGu-----CCGCGACGCgGUC- -5'
21585 3' -62.7 NC_004812.1 + 98731 0.66 0.558377
Target:  5'- -cGUUCUcGCGCGGGgGCaGCGCCc- -3'
miRNA:   3'- cuCAGGGuCGCGUCCgCGaCGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 98673 0.73 0.241653
Target:  5'- gGGGUCgagCCGGgGCGGGCGCggucgaaccgccGCGCCGGg -3'
miRNA:   3'- -CUCAG---GGUCgCGUCCGCGa-----------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 98623 0.66 0.568127
Target:  5'- -cGUCgCGGCcgucGCGGccGCGCUGCGcCCGGg -3'
miRNA:   3'- cuCAGgGUCG----CGUC--CGCGACGC-GGUC- -5'
21585 3' -62.7 NC_004812.1 + 98530 0.7 0.370502
Target:  5'- cGGGUUCguGUGCGcggccucGGCGCcggGCGCCGGg -3'
miRNA:   3'- -CUCAGGguCGCGU-------CCGCGa--CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 98487 0.66 0.577919
Target:  5'- aGGGUCgUggguGGgGC-GGCGCgggGCGCCGGg -3'
miRNA:   3'- -CUCAGgG----UCgCGuCCGCGa--CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 98381 0.66 0.597607
Target:  5'- cGGGUCCUcgggcGGCGCGgcGGcCGCggggcgGCGCCGc -3'
miRNA:   3'- -CUCAGGG-----UCGCGU--CC-GCGa-----CGCGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.