Results 41 - 60 of 262 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21585 | 3' | -62.7 | NC_004812.1 | + | 19694 | 0.74 | 0.205702 |
Target: 5'- ---gUCCAGCGCGgcGGCGCgcgGCGCCGGc -3' miRNA: 3'- cucaGGGUCGCGU--CCGCGa--CGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 125224 | 0.74 | 0.205702 |
Target: 5'- uGAGUUCgGGCaGCAGGCGCgUGCGCacgCAGg -3' miRNA: 3'- -CUCAGGgUCG-CGUCCGCG-ACGCG---GUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 145857 | 0.74 | 0.196045 |
Target: 5'- gGAGUCUC-GCGCAGGCGCgucGcCGCCGu -3' miRNA: 3'- -CUCAGGGuCGCGUCCGCGa--C-GCGGUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 129345 | 0.75 | 0.173622 |
Target: 5'- aGGUCCCcGCGCAGGCGCaugaGCaCCAGc -3' miRNA: 3'- cUCAGGGuCGCGUCCGCGa---CGcGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 46438 | 0.78 | 0.113622 |
Target: 5'- --cUCCCcugGGCGCuGGCGCUGgGCCAGg -3' miRNA: 3'- cucAGGG---UCGCGuCCGCGACgCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 99378 | 0.71 | 0.298439 |
Target: 5'- cGAG-CCgCAGCGCcgugucGGCGCUGCGgCGGc -3' miRNA: 3'- -CUCaGG-GUCGCGu-----CCGCGACGCgGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 127871 | 0.71 | 0.298439 |
Target: 5'- cGGG-CCCGGCGCGcgcGGCGUcgcgguccaGCGCCAGg -3' miRNA: 3'- -CUCaGGGUCGCGU---CCGCGa--------CGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 154746 | 0.69 | 0.387239 |
Target: 5'- gGGGUCgCGGaggaGCGGGCcgggGCUGCGCgGGg -3' miRNA: 3'- -CUCAGgGUCg---CGUCCG----CGACGCGgUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 100719 | 0.7 | 0.379207 |
Target: 5'- -cGUCgCCAGCGCGGuGUGCaGCGCgUAGa -3' miRNA: 3'- cuCAG-GGUCGCGUC-CGCGaCGCG-GUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 57135 | 0.7 | 0.371287 |
Target: 5'- -uGUCUgugGGCGCGGGCGCagGCGCCc- -3' miRNA: 3'- cuCAGGg--UCGCGUCCGCGa-CGCGGuc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 101933 | 0.7 | 0.348213 |
Target: 5'- gGGGcCCCggacgcgcGGCGCGGGCgGCggGCGUCAGg -3' miRNA: 3'- -CUCaGGG--------UCGCGUCCG-CGa-CGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 58360 | 0.7 | 0.348213 |
Target: 5'- cGGGUCCCGGCcucCAGG-GCcGCGCCGc -3' miRNA: 3'- -CUCAGGGUCGc--GUCCgCGaCGCGGUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 101318 | 0.7 | 0.347461 |
Target: 5'- cGAG-CCCAccucggcGUGCAGGCGCU-CGCCGc -3' miRNA: 3'- -CUCaGGGU-------CGCGUCCGCGAcGCGGUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 83908 | 0.7 | 0.347461 |
Target: 5'- uGGUCCgAGCGUugucggaAGGCGUUGCuGCCGu -3' miRNA: 3'- cUCAGGgUCGCG-------UCCGCGACG-CGGUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 45170 | 0.7 | 0.340752 |
Target: 5'- gGGGUUCCAGa-CGGGCGCgUGCGUCAc -3' miRNA: 3'- -CUCAGGGUCgcGUCCGCG-ACGCGGUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 97961 | 0.7 | 0.340752 |
Target: 5'- gGGGUCCagGGCGCcgguccugGGGCGgUGgGCCGGg -3' miRNA: 3'- -CUCAGGg-UCGCG--------UCCGCgACgCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 21152 | 0.7 | 0.338537 |
Target: 5'- -uGUCgCCGGCGCgcagcucgcggaggAGGCGCUGgGCgCGGa -3' miRNA: 3'- cuCAG-GGUCGCG--------------UCCGCGACgCG-GUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 12114 | 0.7 | 0.333408 |
Target: 5'- -cGUgUCCGGCGUcggggggguuggGGGCGCgcgGCGCCGGg -3' miRNA: 3'- cuCA-GGGUCGCG------------UCCGCGa--CGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 130137 | 0.71 | 0.319775 |
Target: 5'- cGGGcgCCCacacgGGCGCGGGCGCgccggcggccucguaGCGCCGGc -3' miRNA: 3'- -CUCa-GGG-----UCGCGUCCGCGa--------------CGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 7712 | 0.71 | 0.31907 |
Target: 5'- cGAGUCCgCGGCGgGGGUcuCcGCGCCGGg -3' miRNA: 3'- -CUCAGG-GUCGCgUCCGc-GaCGCGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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