Results 81 - 100 of 262 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21585 | 3' | -62.7 | NC_004812.1 | + | 95054 | 0.68 | 0.437712 |
Target: 5'- gGGGUCCCGGCGCGaGCGgCUacGCGaCCGc -3' miRNA: 3'- -CUCAGGGUCGCGUcCGC-GA--CGC-GGUc -5' |
|||||||
21585 | 3' | -62.7 | NC_004812.1 | + | 122351 | 0.68 | 0.437712 |
Target: 5'- gGGGuUCCCGGCGgGGGcCGggGCGCgGGg -3' miRNA: 3'- -CUC-AGGGUCGCgUCC-GCgaCGCGgUC- -5' |
|||||||
21585 | 3' | -62.7 | NC_004812.1 | + | 50465 | 0.68 | 0.437712 |
Target: 5'- cGAG-CUCGGCcucgGCGGGCGCgugugGaCGCCGGg -3' miRNA: 3'- -CUCaGGGUCG----CGUCCGCGa----C-GCGGUC- -5' |
|||||||
21585 | 3' | -62.7 | NC_004812.1 | + | 25908 | 0.68 | 0.446486 |
Target: 5'- ---gCCCAGCGCcgcGGGCGC-GCGUCGc -3' miRNA: 3'- cucaGGGUCGCG---UCCGCGaCGCGGUc -5' |
|||||||
21585 | 3' | -62.7 | NC_004812.1 | + | 153647 | 0.68 | 0.455357 |
Target: 5'- -cGUCUCGGCGCuGGGCGCgcaggGCGUg-- -3' miRNA: 3'- cuCAGGGUCGCG-UCCGCGa----CGCGguc -5' |
|||||||
21585 | 3' | -62.7 | NC_004812.1 | + | 94343 | 0.68 | 0.455357 |
Target: 5'- uGGGUCUCcGCGCGcGGCGCgGCcCCGGc -3' miRNA: 3'- -CUCAGGGuCGCGU-CCGCGaCGcGGUC- -5' |
|||||||
21585 | 3' | -62.7 | NC_004812.1 | + | 95006 | 0.68 | 0.455357 |
Target: 5'- gGAG-CUCGcucGCGCAGGUGCUGgggcuccacCGCCGGa -3' miRNA: 3'- -CUCaGGGU---CGCGUCCGCGAC---------GCGGUC- -5' |
|||||||
21585 | 3' | -62.7 | NC_004812.1 | + | 16161 | 0.69 | 0.429038 |
Target: 5'- cGAGcUCCGGCGCgcccgacuggGGGCGCUcgauCGCCAGc -3' miRNA: 3'- -CUCaGGGUCGCG----------UCCGCGAc---GCGGUC- -5' |
|||||||
21585 | 3' | -62.7 | NC_004812.1 | + | 127936 | 0.69 | 0.411998 |
Target: 5'- ---cCCCAgcgcGCGCAGGCGCggugcgagUGCGCCu- -3' miRNA: 3'- cucaGGGU----CGCGUCCGCG--------ACGCGGuc -5' |
|||||||
21585 | 3' | -62.7 | NC_004812.1 | + | 54542 | 0.69 | 0.411998 |
Target: 5'- uGGUgCCCGGCGCGcccGGCGCgGCcCCGGc -3' miRNA: 3'- cUCA-GGGUCGCGU---CCGCGaCGcGGUC- -5' |
|||||||
21585 | 3' | -62.7 | NC_004812.1 | + | 100719 | 0.7 | 0.379207 |
Target: 5'- -cGUCgCCAGCGCGGuGUGCaGCGCgUAGa -3' miRNA: 3'- cuCAG-GGUCGCGUC-CGCGaCGCG-GUC- -5' |
|||||||
21585 | 3' | -62.7 | NC_004812.1 | + | 154746 | 0.69 | 0.387239 |
Target: 5'- gGGGUCgCGGaggaGCGGGCcgggGCUGCGCgGGg -3' miRNA: 3'- -CUCAGgGUCg---CGUCCG----CGACGCGgUC- -5' |
|||||||
21585 | 3' | -62.7 | NC_004812.1 | + | 152852 | 0.69 | 0.388049 |
Target: 5'- -cGUCgCCGGCGCcgccgcgccgcugcuGGCGCgcggcccGCGCCAGg -3' miRNA: 3'- cuCAG-GGUCGCGu--------------CCGCGa------CGCGGUC- -5' |
|||||||
21585 | 3' | -62.7 | NC_004812.1 | + | 82831 | 0.69 | 0.395383 |
Target: 5'- -cGUCUCAGCGUacccggGGGUGCgcGCGCCGa -3' miRNA: 3'- cuCAGGGUCGCG------UCCGCGa-CGCGGUc -5' |
|||||||
21585 | 3' | -62.7 | NC_004812.1 | + | 32413 | 0.69 | 0.395383 |
Target: 5'- cGGUCgCCGcCGCGGGCGCggccGCGCcCAGc -3' miRNA: 3'- cUCAG-GGUcGCGUCCGCGa---CGCG-GUC- -5' |
|||||||
21585 | 3' | -62.7 | NC_004812.1 | + | 100367 | 0.69 | 0.395383 |
Target: 5'- cGGUUCCGGCGCccgccgccgggGGGCGCgagGCcaccgGCCGGa -3' miRNA: 3'- cUCAGGGUCGCG-----------UCCGCGa--CG-----CGGUC- -5' |
|||||||
21585 | 3' | -62.7 | NC_004812.1 | + | 126987 | 0.69 | 0.395383 |
Target: 5'- -cGUCCuCGGCGgGcggcGGCGgaGCGCCGGc -3' miRNA: 3'- cuCAGG-GUCGCgU----CCGCgaCGCGGUC- -5' |
|||||||
21585 | 3' | -62.7 | NC_004812.1 | + | 6908 | 0.69 | 0.411998 |
Target: 5'- uGGUCUCGGgGC--GCGCUGCGCCc- -3' miRNA: 3'- cUCAGGGUCgCGucCGCGACGCGGuc -5' |
|||||||
21585 | 3' | -62.7 | NC_004812.1 | + | 37663 | 0.69 | 0.411998 |
Target: 5'- cAGUCCCacaccAGCGgGGGCaGCaGCGCCGc -3' miRNA: 3'- cUCAGGG-----UCGCgUCCG-CGaCGCGGUc -5' |
|||||||
21585 | 3' | -62.7 | NC_004812.1 | + | 122842 | 0.68 | 0.455357 |
Target: 5'- cGGUgCCGGCGCGcacggcguccucGGCGUcGCGCCGc -3' miRNA: 3'- cUCAgGGUCGCGU------------CCGCGaCGCGGUc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home