miRNA display CGI


Results 101 - 120 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 77135 0.68 0.482523
Target:  5'- -cGUCCuCGGC-CAGGCGCcGCGUCu- -3'
miRNA:   3'- cuCAGG-GUCGcGUCCGCGaCGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 96260 0.67 0.491752
Target:  5'- -cGUCCgaGGCGCGGGCGggccugGCGCCc- -3'
miRNA:   3'- cuCAGGg-UCGCGUCCGCga----CGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 113748 0.67 0.491752
Target:  5'- -cGUCCUcgugacgcuGGCGCGccugccgacGGCGCcaaGCGCCAGa -3'
miRNA:   3'- cuCAGGG---------UCGCGU---------CCGCGa--CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 148908 0.67 0.491752
Target:  5'- cGAGcgUCCGGCGaCGGGCGUccggcgGCGUCGGc -3'
miRNA:   3'- -CUCa-GGGUCGC-GUCCGCGa-----CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 43487 0.67 0.491752
Target:  5'- aGGUCgCGGCGCGucucGGUGC-GCGUCAGc -3'
miRNA:   3'- cUCAGgGUCGCGU----CCGCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 25908 0.68 0.446486
Target:  5'- ---gCCCAGCGCcgcGGGCGC-GCGUCGc -3'
miRNA:   3'- cucaGGGUCGCG---UCCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 50465 0.68 0.437712
Target:  5'- cGAG-CUCGGCcucgGCGGGCGCgugugGaCGCCGGg -3'
miRNA:   3'- -CUCaGGGUCG----CGUCCGCGa----C-GCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 32413 0.69 0.395383
Target:  5'- cGGUCgCCGcCGCGGGCGCggccGCGCcCAGc -3'
miRNA:   3'- cUCAG-GGUcGCGUCCGCGa---CGCG-GUC- -5'
21585 3' -62.7 NC_004812.1 + 100367 0.69 0.395383
Target:  5'- cGGUUCCGGCGCccgccgccgggGGGCGCgagGCcaccgGCCGGa -3'
miRNA:   3'- cUCAGGGUCGCG-----------UCCGCGa--CG-----CGGUC- -5'
21585 3' -62.7 NC_004812.1 + 126987 0.69 0.395383
Target:  5'- -cGUCCuCGGCGgGcggcGGCGgaGCGCCGGc -3'
miRNA:   3'- cuCAGG-GUCGCgU----CCGCgaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 6908 0.69 0.411998
Target:  5'- uGGUCUCGGgGC--GCGCUGCGCCc- -3'
miRNA:   3'- cUCAGGGUCgCGucCGCGACGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 37663 0.69 0.411998
Target:  5'- cAGUCCCacaccAGCGgGGGCaGCaGCGCCGc -3'
miRNA:   3'- cUCAGGG-----UCGCgUCCG-CGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 54542 0.69 0.411998
Target:  5'- uGGUgCCCGGCGCGcccGGCGCgGCcCCGGc -3'
miRNA:   3'- cUCA-GGGUCGCGU---CCGCGaCGcGGUC- -5'
21585 3' -62.7 NC_004812.1 + 127936 0.69 0.411998
Target:  5'- ---cCCCAgcgcGCGCAGGCGCggugcgagUGCGCCu- -3'
miRNA:   3'- cucaGGGU----CGCGUCCGCG--------ACGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 16161 0.69 0.429038
Target:  5'- cGAGcUCCGGCGCgcccgacuggGGGCGCUcgauCGCCAGc -3'
miRNA:   3'- -CUCaGGGUCGCG----------UCCGCGAc---GCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 44321 0.69 0.429038
Target:  5'- cGAGcucggCCCGG-GCGGGCGCgGC-CCAGa -3'
miRNA:   3'- -CUCa----GGGUCgCGUCCGCGaCGcGGUC- -5'
21585 3' -62.7 NC_004812.1 + 125634 0.68 0.435969
Target:  5'- -cGUCCCucgcgagugcgcGCGCGuGGCGCcGCGCCGc -3'
miRNA:   3'- cuCAGGGu-----------CGCGU-CCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 121007 0.68 0.43684
Target:  5'- -cGUCCUcGCGCggcgggccggGGGCGCUccccucgGCGCCGGc -3'
miRNA:   3'- cuCAGGGuCGCG----------UCCGCGA-------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 95054 0.68 0.437712
Target:  5'- gGGGUCCCGGCGCGaGCGgCUacGCGaCCGc -3'
miRNA:   3'- -CUCAGGGUCGCGUcCGC-GA--CGC-GGUc -5'
21585 3' -62.7 NC_004812.1 + 122351 0.68 0.437712
Target:  5'- gGGGuUCCCGGCGgGGGcCGggGCGCgGGg -3'
miRNA:   3'- -CUC-AGGGUCGCgUCC-GCgaCGCGgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.