miRNA display CGI


Results 121 - 140 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 149001 0.67 0.501062
Target:  5'- aGGGUgUgCGGCGggcCGGGCGCggcgGCGCCGGc -3'
miRNA:   3'- -CUCA-GgGUCGC---GUCCGCGa---CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 48 0.67 0.501062
Target:  5'- cGGGcCgCgGGCGCGgcGGCGCgGCGCCAc -3'
miRNA:   3'- -CUCaG-GgUCGCGU--CCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 19757 0.68 0.464322
Target:  5'- cAG-CCCGGUGCGGGggucccaggcgaCGC-GCGCCGGg -3'
miRNA:   3'- cUCaGGGUCGCGUCC------------GCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 130893 0.68 0.464322
Target:  5'- cGAGUCgCGGCGCGGG-GCcggggGCGUCGc -3'
miRNA:   3'- -CUCAGgGUCGCGUCCgCGa----CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 30811 0.68 0.464322
Target:  5'- aGGGcCCCacgggGGgGCAGG-GCgGCGCCAGg -3'
miRNA:   3'- -CUCaGGG-----UCgCGUCCgCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 127936 0.69 0.411998
Target:  5'- ---cCCCAgcgcGCGCAGGCGCggugcgagUGCGCCu- -3'
miRNA:   3'- cucaGGGU----CGCGUCCGCG--------ACGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 16161 0.69 0.429038
Target:  5'- cGAGcUCCGGCGCgcccgacuggGGGCGCUcgauCGCCAGc -3'
miRNA:   3'- -CUCaGGGUCGCG----------UCCGCGAc---GCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 44321 0.69 0.429038
Target:  5'- cGAGcucggCCCGG-GCGGGCGCgGC-CCAGa -3'
miRNA:   3'- -CUCa----GGGUCgCGUCCGCGaCGcGGUC- -5'
21585 3' -62.7 NC_004812.1 + 125634 0.68 0.435969
Target:  5'- -cGUCCCucgcgagugcgcGCGCGuGGCGCcGCGCCGc -3'
miRNA:   3'- cuCAGGGu-----------CGCGU-CCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 121007 0.68 0.43684
Target:  5'- -cGUCCUcGCGCggcgggccggGGGCGCUccccucgGCGCCGGc -3'
miRNA:   3'- cuCAGGGuCGCG----------UCCGCGA-------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 95054 0.68 0.437712
Target:  5'- gGGGUCCCGGCGCGaGCGgCUacGCGaCCGc -3'
miRNA:   3'- -CUCAGGGUCGCGUcCGC-GA--CGC-GGUc -5'
21585 3' -62.7 NC_004812.1 + 122351 0.68 0.437712
Target:  5'- gGGGuUCCCGGCGgGGGcCGggGCGCgGGg -3'
miRNA:   3'- -CUC-AGGGUCGCgUCC-GCgaCGCGgUC- -5'
21585 3' -62.7 NC_004812.1 + 136378 0.67 0.501062
Target:  5'- aGGUCCCGGCGgccGCGCUagccguugcggGCGCCAc -3'
miRNA:   3'- cUCAGGGUCGCgucCGCGA-----------CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 50465 0.68 0.437712
Target:  5'- cGAG-CUCGGCcucgGCGGGCGCgugugGaCGCCGGg -3'
miRNA:   3'- -CUCaGGGUCG----CGUCCGCGa----C-GCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 25908 0.68 0.446486
Target:  5'- ---gCCCAGCGCcgcGGGCGC-GCGUCGc -3'
miRNA:   3'- cucaGGGUCGCG---UCCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 153647 0.68 0.455357
Target:  5'- -cGUCUCGGCGCuGGGCGCgcaggGCGUg-- -3'
miRNA:   3'- cuCAGGGUCGCG-UCCGCGa----CGCGguc -5'
21585 3' -62.7 NC_004812.1 + 94343 0.68 0.455357
Target:  5'- uGGGUCUCcGCGCGcGGCGCgGCcCCGGc -3'
miRNA:   3'- -CUCAGGGuCGCGU-CCGCGaCGcGGUC- -5'
21585 3' -62.7 NC_004812.1 + 95006 0.68 0.455357
Target:  5'- gGAG-CUCGcucGCGCAGGUGCUGgggcuccacCGCCGGa -3'
miRNA:   3'- -CUCaGGGU---CGCGUCCGCGAC---------GCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 122842 0.68 0.455357
Target:  5'- cGGUgCCGGCGCGcacggcguccucGGCGUcGCGCCGc -3'
miRNA:   3'- cUCAgGGUCGCGU------------CCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 100907 0.68 0.464322
Target:  5'- cGAG-CgCgGGUGCAGGCGC-GCGCCc- -3'
miRNA:   3'- -CUCaG-GgUCGCGUCCGCGaCGCGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.